miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 93596 0.66 0.625527
Target:  5'- cGGCGCUGGaGaagaUCaaGGCCcgcGGCGg -3'
miRNA:   3'- aCCGUGACC-Cg---AGggCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 116568 0.66 0.605514
Target:  5'- aUGGCGCacgUGGGCaUCUGcGCUcuGGGCGc -3'
miRNA:   3'- -ACCGUG---ACCCGaGGGC-CGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3940 0.66 0.605514
Target:  5'- cUGGCGCcgcggcgggggGGGCgccgUCuCCGGCggCGAGGGCGc -3'
miRNA:   3'- -ACCGUGa----------CCCG----AG-GGCCG--GUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 79572 0.8 0.083345
Target:  5'- gGGCGCcGGGCUCgCGGCCucuucGGGCGg -3'
miRNA:   3'- aCCGUGaCCCGAGgGCCGGuu---UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 69261 0.66 0.619519
Target:  5'- gUGGCGCaUGGGCggcccccacgucagcUCgCCGcGCagGAAGGCGu -3'
miRNA:   3'- -ACCGUG-ACCCG---------------AG-GGC-CGg-UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 100598 0.66 0.615514
Target:  5'- cGGC-CUGuGGCcccaagcgCCCGGCgGgcGGCGc -3'
miRNA:   3'- aCCGuGAC-CCGa-------GGGCCGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 50524 0.66 0.615514
Target:  5'- cGGCAU--GGC-CCCGcUCGAAGGCGa -3'
miRNA:   3'- aCCGUGacCCGaGGGCcGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3088 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 75849 0.66 0.615514
Target:  5'- cUGGCACccUGGGUacgguuUCCCGccGCC-GGGGCu -3'
miRNA:   3'- -ACCGUG--ACCCG------AGGGC--CGGuUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 27698 0.66 0.612513
Target:  5'- aGGCGCgcgagcgccggcGGGCcgCCCGcGCCGAGcuggccgagcuguGGCGg -3'
miRNA:   3'- aCCGUGa-----------CCCGa-GGGC-CGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 68854 0.66 0.615514
Target:  5'- gGGCGCgagGcGGCggcgugcgCCgGGCCGaaGAGGCc -3'
miRNA:   3'- aCCGUGa--C-CCGa-------GGgCCGGU--UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 103011 0.66 0.615514
Target:  5'- gGGCGCgGcGGCgCCCaGcGCCGgcGGCGg -3'
miRNA:   3'- aCCGUGaC-CCGaGGG-C-CGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 21731 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 68447 0.66 0.615514
Target:  5'- aUGGCGCgGGaGCgCCCG-CUguGGAGGCGa -3'
miRNA:   3'- -ACCGUGaCC-CGaGGGCcGG--UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 96460 0.66 0.625527
Target:  5'- aGGCGCUGcggagaccaGGCUUgCGGgCGGcGGGCGu -3'
miRNA:   3'- aCCGUGAC---------CCGAGgGCCgGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 104534 0.66 0.615514
Target:  5'- cGGCGCUGcgcGGCggCCCcggGGCCGcuacgcGGCGg -3'
miRNA:   3'- aCCGUGAC---CCGa-GGG---CCGGUuu----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 34548 0.66 0.615514
Target:  5'- cUGGC-C-GGGCUgCUCGGCCGcugcagcGGCGg -3'
miRNA:   3'- -ACCGuGaCCCGA-GGGCCGGUuu-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 14446 0.66 0.605514
Target:  5'- cGGCGCcgGGGUgcgcggCCgCGGCCucuGGGUc -3'
miRNA:   3'- aCCGUGa-CCCGa-----GG-GCCGGuu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 26509 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 90745 0.66 0.615514
Target:  5'- cGGCGCguggccGGGC-CCCGGgagcgggagcgcCCuuGAGGCGc -3'
miRNA:   3'- aCCGUGa-----CCCGaGGGCC------------GGu-UUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.