miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 93596 0.66 0.625527
Target:  5'- cGGCGCUGGaGaagaUCaaGGCCcgcGGCGg -3'
miRNA:   3'- aCCGUGACC-Cg---AGggCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 42722 0.66 0.585576
Target:  5'- uUGGCGCggcGGGCggCCGcGCgGgcGGCGg -3'
miRNA:   3'- -ACCGUGa--CCCGagGGC-CGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 69690 0.66 0.595532
Target:  5'- gGGCGCgGGGCcggcgCUCGGUCcgcGGCGc -3'
miRNA:   3'- aCCGUGaCCCGa----GGGCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 90310 0.66 0.605514
Target:  5'- aGcGCGCguucggugGGGCcgCCgGgGCCGGGGGCGc -3'
miRNA:   3'- aC-CGUGa-------CCCGa-GGgC-CGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 74354 0.66 0.615514
Target:  5'- gGGCGCcaccaaggUGGGCUgCUGcGCCucguGGCGc -3'
miRNA:   3'- aCCGUG--------ACCCGAgGGC-CGGuuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 83467 0.66 0.575652
Target:  5'- gGGCGucGGGCUCCCGGgC---GGCu -3'
miRNA:   3'- aCCGUgaCCCGAGGGCCgGuuuCCGc -5'
6682 3' -61.7 NC_001847.1 + 1151 0.66 0.584582
Target:  5'- cGGCGC-GcGGCUCCggcagcgCGGCCGcgcagAAGGCc -3'
miRNA:   3'- aCCGUGaC-CCGAGG-------GCCGGU-----UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 3088 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 56636 0.66 0.595532
Target:  5'- -cGCGCga-GCagCCGGCCGAGGGUGg -3'
miRNA:   3'- acCGUGaccCGagGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 25416 0.66 0.603516
Target:  5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3'
miRNA:   3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 90745 0.66 0.615514
Target:  5'- cGGCGCguggccGGGC-CCCGGgagcgggagcgcCCuuGAGGCGc -3'
miRNA:   3'- aCCGUGa-----CCCGaGGGCC------------GGu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 100598 0.66 0.615514
Target:  5'- cGGC-CUGuGGCcccaagcgCCCGGCgGgcGGCGc -3'
miRNA:   3'- aCCGuGAC-CCGa-------GGGCCGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 95316 0.66 0.575652
Target:  5'- aGGCGC-GGcGCcggCagGGCCGAAGGCGc -3'
miRNA:   3'- aCCGUGaCC-CGa--GggCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26482 0.66 0.575652
Target:  5'- cUGGUAg-GGGCgggCCUGGUgcAAGGCGg -3'
miRNA:   3'- -ACCGUgaCCCGa--GGGCCGguUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 88253 0.66 0.595532
Target:  5'- cGGCGCgGGGCgCCgGGCgGGgacGGGgGg -3'
miRNA:   3'- aCCGUGaCCCGaGGgCCGgUU---UCCgC- -5'
6682 3' -61.7 NC_001847.1 + 34548 0.66 0.615514
Target:  5'- cUGGC-C-GGGCUgCUCGGCCGcugcagcGGCGg -3'
miRNA:   3'- -ACCGuGaCCCGA-GGGCCGGUuu-----CCGC- -5'
6682 3' -61.7 NC_001847.1 + 68854 0.66 0.615514
Target:  5'- gGGCGCgagGcGGCggcgugcgCCgGGCCGaaGAGGCc -3'
miRNA:   3'- aCCGUGa--C-CCGa-------GGgCCGGU--UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 69261 0.66 0.619519
Target:  5'- gUGGCGCaUGGGCggcccccacgucagcUCgCCGcGCagGAAGGCGu -3'
miRNA:   3'- -ACCGUG-ACCCG---------------AG-GGC-CGg-UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 32081 0.66 0.605514
Target:  5'- gGGCccCUGGGCgCCgGGCgucGGGGCGc -3'
miRNA:   3'- aCCGu-GACCCGaGGgCCGgu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 87988 0.66 0.595532
Target:  5'- cGGCACUuuGCggCCgGGCCcgAGGGGCGc -3'
miRNA:   3'- aCCGUGAccCGa-GGgCCGG--UUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.