miRNA display CGI


Results 61 - 80 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 18849 0.74 0.913542
Target:  5'- cGCCGCacggGUCAGCGggGcacgcugccucgccGAgcGGCGCCa -3'
miRNA:   3'- -CGGUGg---UAGUCGCuuC--------------UUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 55341 0.74 0.915411
Target:  5'- gGCCGCUcgCGGCGGugcuGAAc--GCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUu---CUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 85016 0.74 0.915411
Target:  5'- cGCCGCCAUCAcCGAGGccagccGGCGCUc -3'
miRNA:   3'- -CGGUGGUAGUcGCUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 112320 0.74 0.915411
Target:  5'- aCUACC-UCGGCGggGAGcGGcCGCCg -3'
miRNA:   3'- cGGUGGuAGUCGCuuCUUaUUuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 86510 0.74 0.915411
Target:  5'- -gCACCGUCGcGCGgcGGcUGGGCGCCc -3'
miRNA:   3'- cgGUGGUAGU-CGCuuCUuAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 61008 0.74 0.915411
Target:  5'- gGCCGCCAUCGGCGccGc----GCGUCa -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 29911 0.74 0.920275
Target:  5'- gGCCGCCGcggggggccccUCGGgGGAGGAgacucugggccgAGGCGCCg -3'
miRNA:   3'- -CGGUGGU-----------AGUCgCUUCUUa-----------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 45959 0.74 0.921464
Target:  5'- gGCgGCCAUCGGCGAAa---AGGCGCg -3'
miRNA:   3'- -CGgUGGUAGUCGCUUcuuaUUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 102033 0.74 0.921464
Target:  5'- cGCCGCgGUCGGCcAGGAuggcgcGAGCGCUg -3'
miRNA:   3'- -CGGUGgUAGUCGcUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34671 0.74 0.921464
Target:  5'- gGCgGCCGcgCAGCGGcAGGAgGAGCGCUg -3'
miRNA:   3'- -CGgUGGUa-GUCGCU-UCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 41996 0.74 0.921464
Target:  5'- aGCgCugCGUCGGCGcGGAAcGAagcuGCGCCg -3'
miRNA:   3'- -CG-GugGUAGUCGCuUCUUaUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 91580 0.74 0.922054
Target:  5'- cGUCGCCcgCGGCGAAGcgcgcaaaccgcGGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCuuau--------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 90736 0.74 0.92554
Target:  5'- aGCCGCUcgCGGCGcguggccgggccccGGGAGcggGAGCGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGC--------------UUCUUa--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 57754 0.74 0.927247
Target:  5'- uGCCGCCGggccacgAGCG-AGAGcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUag-----UCGCuUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 98155 0.74 0.927247
Target:  5'- cGCCGCCGcUCGGCGcGGGcccgcuCGCCg -3'
miRNA:   3'- -CGGUGGU-AGUCGCuUCUuauuu-GCGG- -5'
6682 5' -47.6 NC_001847.1 + 18706 0.74 0.927247
Target:  5'- cGUCACCGcCAGCGccGcgggGAGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 132491 0.74 0.927247
Target:  5'- aGCCGCCG--GGCGAAG-----GCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 62675 0.74 0.927247
Target:  5'- cGCCAUCAUCAGCacgccguGGUGcAGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGcuuc---UUAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 96732 0.74 0.927247
Target:  5'- cCCGCCccugCGGCGAAGAAUGAGa-CCg -3'
miRNA:   3'- cGGUGGua--GUCGCUUCUUAUUUgcGG- -5'
6682 5' -47.6 NC_001847.1 + 54348 0.73 0.932758
Target:  5'- cGCCGCCGUaaaGGCGugu-AUAAAgGCCg -3'
miRNA:   3'- -CGGUGGUAg--UCGCuucuUAUUUgCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.