Results 61 - 80 of 579 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 18849 | 0.74 | 0.913542 |
Target: 5'- cGCCGCacggGUCAGCGggGcacgcugccucgccGAgcGGCGCCa -3' miRNA: 3'- -CGGUGg---UAGUCGCuuC--------------UUauUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 55341 | 0.74 | 0.915411 |
Target: 5'- gGCCGCUcgCGGCGGugcuGAAc--GCGCCg -3' miRNA: 3'- -CGGUGGuaGUCGCUu---CUUauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 85016 | 0.74 | 0.915411 |
Target: 5'- cGCCGCCAUCAcCGAGGccagccGGCGCUc -3' miRNA: 3'- -CGGUGGUAGUcGCUUCuuau--UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 112320 | 0.74 | 0.915411 |
Target: 5'- aCUACC-UCGGCGggGAGcGGcCGCCg -3' miRNA: 3'- cGGUGGuAGUCGCuuCUUaUUuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 86510 | 0.74 | 0.915411 |
Target: 5'- -gCACCGUCGcGCGgcGGcUGGGCGCCc -3' miRNA: 3'- cgGUGGUAGU-CGCuuCUuAUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 61008 | 0.74 | 0.915411 |
Target: 5'- gGCCGCCAUCGGCGccGc----GCGUCa -3' miRNA: 3'- -CGGUGGUAGUCGCuuCuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 29911 | 0.74 | 0.920275 |
Target: 5'- gGCCGCCGcggggggccccUCGGgGGAGGAgacucugggccgAGGCGCCg -3' miRNA: 3'- -CGGUGGU-----------AGUCgCUUCUUa-----------UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 45959 | 0.74 | 0.921464 |
Target: 5'- gGCgGCCAUCGGCGAAa---AGGCGCg -3' miRNA: 3'- -CGgUGGUAGUCGCUUcuuaUUUGCGg -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 102033 | 0.74 | 0.921464 |
Target: 5'- cGCCGCgGUCGGCcAGGAuggcgcGAGCGCUg -3' miRNA: 3'- -CGGUGgUAGUCGcUUCUua----UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 34671 | 0.74 | 0.921464 |
Target: 5'- gGCgGCCGcgCAGCGGcAGGAgGAGCGCUg -3' miRNA: 3'- -CGgUGGUa-GUCGCU-UCUUaUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 41996 | 0.74 | 0.921464 |
Target: 5'- aGCgCugCGUCGGCGcGGAAcGAagcuGCGCCg -3' miRNA: 3'- -CG-GugGUAGUCGCuUCUUaUU----UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 91580 | 0.74 | 0.922054 |
Target: 5'- cGUCGCCcgCGGCGAAGcgcgcaaaccgcGGCGCCg -3' miRNA: 3'- -CGGUGGuaGUCGCUUCuuau--------UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 90736 | 0.74 | 0.92554 |
Target: 5'- aGCCGCUcgCGGCGcguggccgggccccGGGAGcggGAGCGCCc -3' miRNA: 3'- -CGGUGGuaGUCGC--------------UUCUUa--UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 57754 | 0.74 | 0.927247 |
Target: 5'- uGCCGCCGggccacgAGCG-AGAGcGGGCGCCg -3' miRNA: 3'- -CGGUGGUag-----UCGCuUCUUaUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 98155 | 0.74 | 0.927247 |
Target: 5'- cGCCGCCGcUCGGCGcGGGcccgcuCGCCg -3' miRNA: 3'- -CGGUGGU-AGUCGCuUCUuauuu-GCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 18706 | 0.74 | 0.927247 |
Target: 5'- cGUCACCGcCAGCGccGcgggGAGCGCCa -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132491 | 0.74 | 0.927247 |
Target: 5'- aGCCGCCG--GGCGAAG-----GCGCCg -3' miRNA: 3'- -CGGUGGUagUCGCUUCuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 62675 | 0.74 | 0.927247 |
Target: 5'- cGCCAUCAUCAGCacgccguGGUGcAGCGCCg -3' miRNA: 3'- -CGGUGGUAGUCGcuuc---UUAU-UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 96732 | 0.74 | 0.927247 |
Target: 5'- cCCGCCccugCGGCGAAGAAUGAGa-CCg -3' miRNA: 3'- cGGUGGua--GUCGCUUCUUAUUUgcGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 54348 | 0.73 | 0.932758 |
Target: 5'- cGCCGCCGUaaaGGCGugu-AUAAAgGCCg -3' miRNA: 3'- -CGGUGGUAg--UCGCuucuUAUUUgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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