miRNA display CGI


Results 61 - 80 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 48681 0.75 0.881158
Target:  5'- uGCCGCCGUCGGCGccGuc--GGCGUCc -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 15038 0.73 0.942971
Target:  5'- gGCCGCCG--GGCGAGcuGUgcGAGCGCCa -3'
miRNA:   3'- -CGGUGGUagUCGCUUcuUA--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 7380 0.73 0.937999
Target:  5'- cGCCGCUGaCAGUGGAGGAcguGGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUCUUau-UUGCGg -5'
6682 5' -47.6 NC_001847.1 + 64459 0.73 0.932758
Target:  5'- cGCCGCCcgCGGCGgcGcg-GGGgGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuaUUUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 35620 0.73 0.932758
Target:  5'- cGCCGCCGcCGGCGGcgcuGGGGccAGCGCUg -3'
miRNA:   3'- -CGGUGGUaGUCGCU----UCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 96732 0.74 0.927247
Target:  5'- cCCGCCccugCGGCGAAGAAUGAGa-CCg -3'
miRNA:   3'- cGGUGGua--GUCGCUUCUUAUUUgcGG- -5'
6682 5' -47.6 NC_001847.1 + 41996 0.74 0.921464
Target:  5'- aGCgCugCGUCGGCGcGGAAcGAagcuGCGCCg -3'
miRNA:   3'- -CG-GugGUAGUCGCuUCUUaUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34671 0.74 0.921464
Target:  5'- gGCgGCCGcgCAGCGGcAGGAgGAGCGCUg -3'
miRNA:   3'- -CGgUGGUa-GUCGCU-UCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 86510 0.74 0.915411
Target:  5'- -gCACCGUCGcGCGgcGGcUGGGCGCCc -3'
miRNA:   3'- cgGUGGUAGU-CGCuuCUuAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 61008 0.74 0.915411
Target:  5'- gGCCGCCAUCGGCGccGc----GCGUCa -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 55341 0.74 0.915411
Target:  5'- gGCCGCUcgCGGCGGugcuGAAc--GCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUu---CUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 18849 0.74 0.913542
Target:  5'- cGCCGCacggGUCAGCGggGcacgcugccucgccGAgcGGCGCCa -3'
miRNA:   3'- -CGGUGg---UAGUCGCuuC--------------UUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 111426 0.74 0.909088
Target:  5'- cGCUcgGCCGggGGCGggGGGagGAGCGCCc -3'
miRNA:   3'- -CGG--UGGUagUCGCuuCUUa-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99771 0.74 0.909088
Target:  5'- aGCCGCCGcggcuuUgGGCGggGGGc-AGCGCCu -3'
miRNA:   3'- -CGGUGGU------AgUCGCuuCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 80186 0.74 0.909088
Target:  5'- cGCCGCCGccUCuGCGGGcGggU--GCGCCg -3'
miRNA:   3'- -CGGUGGU--AGuCGCUU-CuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 45519 0.75 0.902498
Target:  5'- cGCCGCCGggCGGCGcGGAcgGGGCcguGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCuUCUuaUUUG---CGG- -5'
6682 5' -47.6 NC_001847.1 + 34095 0.75 0.895644
Target:  5'- gGCCGCCGUggcucgcgcggCGGCGGAGccugcGGCGCCu -3'
miRNA:   3'- -CGGUGGUA-----------GUCGCUUCuuau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 106754 0.75 0.895644
Target:  5'- uGgCGCCG-CGGCGggGG--GGGCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCuuCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 134158 0.75 0.881158
Target:  5'- uGCCGCCGcCGGCGGcGGAAgcccCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 16703 0.75 0.881158
Target:  5'- gGCCGCCAcCAGCaGGAGccccacGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCG-CUUCuuau--UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.