miRNA display CGI


Results 41 - 60 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 31956 0.78 0.755116
Target:  5'- aGCCugCcgCGGCGgcGGcgggccccGUGGACGCCg -3'
miRNA:   3'- -CGGugGuaGUCGCuuCU--------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 35953 0.77 0.794834
Target:  5'- gGCCGCC-UCGcGCGAGGAccacgaGGGCGCCa -3'
miRNA:   3'- -CGGUGGuAGU-CGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4404 0.77 0.804375
Target:  5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60231 0.77 0.804375
Target:  5'- cGUCGUCGUCGGCGAGGGcUAGcacgGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCUUCUuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 77621 0.77 0.813738
Target:  5'- cGCCGCUG--GGCGAGGAcgGcGCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUUCUuaUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104877 0.76 0.831895
Target:  5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 84238 0.76 0.837184
Target:  5'- gGCCGCCGcgggggaggagggCGGCGAGGAcaaaaaAAACGCCg -3'
miRNA:   3'- -CGGUGGUa------------GUCGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 16971 0.76 0.849228
Target:  5'- cGCgCACCGUcCAGCGcAGGGAgacGCGCCc -3'
miRNA:   3'- -CG-GUGGUA-GUCGC-UUCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67977 0.76 0.857564
Target:  5'- cGCCGCCGagAGCGggGGgccuGUcAugGCCc -3'
miRNA:   3'- -CGGUGGUagUCGCuuCU----UAuUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 100950 0.76 0.865669
Target:  5'- aGCCGCCGcgguaaCAGCGggGcuc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCuuCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 16703 0.75 0.881158
Target:  5'- gGCCGCCAcCAGCaGGAGccccacGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCG-CUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48681 0.75 0.881158
Target:  5'- uGCCGCCGUCGGCGccGuc--GGCGUCc -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 134158 0.75 0.881158
Target:  5'- uGCCGCCGcCGGCGGcGGAAgcccCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 106754 0.75 0.895644
Target:  5'- uGgCGCCG-CGGCGggGG--GGGCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCuuCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34095 0.75 0.895644
Target:  5'- gGCCGCCGUggcucgcgcggCGGCGGAGccugcGGCGCCu -3'
miRNA:   3'- -CGGUGGUA-----------GUCGCUUCuuau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 45519 0.75 0.902498
Target:  5'- cGCCGCCGggCGGCGcGGAcgGGGCcguGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCuUCUuaUUUG---CGG- -5'
6682 5' -47.6 NC_001847.1 + 80186 0.74 0.909088
Target:  5'- cGCCGCCGccUCuGCGGGcGggU--GCGCCg -3'
miRNA:   3'- -CGGUGGU--AGuCGCUU-CuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99771 0.74 0.909088
Target:  5'- aGCCGCCGcggcuuUgGGCGggGGGc-AGCGCCu -3'
miRNA:   3'- -CGGUGGU------AgUCGCuuCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 111426 0.74 0.909088
Target:  5'- cGCUcgGCCGggGGCGggGGGagGAGCGCCc -3'
miRNA:   3'- -CGG--UGGUagUCGCuuCUUa-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 55341 0.74 0.915411
Target:  5'- gGCCGCUcgCGGCGGugcuGAAc--GCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUu---CUUauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.