miRNA display CGI


Results 41 - 60 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 75627 0.66 0.999505
Target:  5'- uGCCGCCccacgaCGGCGAugccGGAGccggAGGCGCg -3'
miRNA:   3'- -CGGUGGua----GUCGCU----UCUUa---UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 35862 0.66 0.999674
Target:  5'- cGCCACCucgacgcgcugCGGCGGcagcuGGAGUcgGCGgCg -3'
miRNA:   3'- -CGGUGGua---------GUCGCU-----UCUUAuuUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 113026 0.66 0.999689
Target:  5'- cGCCGCCG-C-GCGucug--GGACGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuucuuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 49823 0.66 0.999382
Target:  5'- cGCCagcggGCCAUCGGCGAGcagcuuGCGUa -3'
miRNA:   3'- -CGG-----UGGUAGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 133874 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126426 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4842 0.66 0.999382
Target:  5'- gGCCGCC---GGCGAuaauGUAuGGCGCCg -3'
miRNA:   3'- -CGGUGGuagUCGCUucu-UAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 59283 0.66 0.999607
Target:  5'- aGCC-CCggCGGCGGgaaaccguacccAGggUGccagggcgcGGCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCU------------UCuuAU---------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14804 0.66 0.999689
Target:  5'- aCCGCag-CGGCGGAGcugcgcGGCGCCc -3'
miRNA:   3'- cGGUGguaGUCGCUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 46215 0.66 0.999505
Target:  5'- cGCCGCCGggccggCcGCGggGAAaucuCGCa -3'
miRNA:   3'- -CGGUGGUa-----GuCGCuuCUUauuuGCGg -5'
6682 5' -47.6 NC_001847.1 + 94183 0.66 0.999505
Target:  5'- gGCCGCC-UCGcGCGGgcAGuucgAGGCGCUg -3'
miRNA:   3'- -CGGUGGuAGU-CGCU--UCuua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48784 0.66 0.999569
Target:  5'- cGCCGCCucGUCuGCGGGcgccucgccGGCGCCa -3'
miRNA:   3'- -CGGUGG--UAGuCGCUUcuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3401 0.66 0.999689
Target:  5'- uCCGCaagCAGCGGgAGAGcagcccggGGGCGCCa -3'
miRNA:   3'- cGGUGguaGUCGCU-UCUUa-------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 131904 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 98940 0.66 0.999382
Target:  5'- cCCGCCuuauaucuUCAGCGAGcccac-GCGCCa -3'
miRNA:   3'- cGGUGGu-------AGUCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 72913 0.66 0.999382
Target:  5'- cGCCACgAggcggucggCGGCGucGggUuuACGCUc -3'
miRNA:   3'- -CGGUGgUa--------GUCGCuuCuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 97951 0.66 0.999607
Target:  5'- cGUgACag-CGGCGAGGggUGGcuguACGUCa -3'
miRNA:   3'- -CGgUGguaGUCGCUUCuuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 90775 0.66 0.999607
Target:  5'- cGCCugCG-CGGCGAGGGGcccguucAGCaGCCc -3'
miRNA:   3'- -CGGugGUaGUCGCUUCUUau-----UUG-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.