miRNA display CGI


Results 21 - 40 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 72913 0.66 0.999382
Target:  5'- cGCCACgAggcggucggCGGCGucGggUuuACGCUc -3'
miRNA:   3'- -CGGUGgUa--------GUCGCuuCuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67693 0.66 0.999658
Target:  5'- gGCauaGCUcUCGGCGAGGugcucgagcGCGCCg -3'
miRNA:   3'- -CGg--UGGuAGUCGCUUCuuauu----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 54696 0.66 0.999494
Target:  5'- cGCgACCAgCGGCGGgagcuGGAaaagacccugcgcGUGAGCGUCu -3'
miRNA:   3'- -CGgUGGUaGUCGCU-----UCU-------------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133425 0.66 0.999607
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 63752 0.66 0.999607
Target:  5'- cGCCGCCuggCGGCGcGGGccAGGC-CCg -3'
miRNA:   3'- -CGGUGGua-GUCGCuUCUuaUUUGcGG- -5'
6682 5' -47.6 NC_001847.1 + 103421 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 124733 0.66 0.999607
Target:  5'- gGCCGCgGgcgaGGCGGAGAGaGGACcGCg -3'
miRNA:   3'- -CGGUGgUag--UCGCUUCUUaUUUG-CGg -5'
6682 5' -47.6 NC_001847.1 + 13538 0.66 0.999422
Target:  5'- uGCCGCUAggCAGCGcgacgcugcacGACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCuucuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2445 0.66 0.999341
Target:  5'- cGCCAgCcgCAGCGAgcucccgaucgagcGGGcgGcGGCGCCc -3'
miRNA:   3'- -CGGUgGuaGUCGCU--------------UCUuaU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126426 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48784 0.66 0.999569
Target:  5'- cGCCGCCucGUCuGCGGGcgccucgccGGCGCCa -3'
miRNA:   3'- -CGGUGG--UAGuCGCUUcuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 90775 0.66 0.999607
Target:  5'- cGCCugCG-CGGCGAGGGGcccguucAGCaGCCc -3'
miRNA:   3'- -CGGugGUaGUCGCUUCUUau-----UUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 71215 0.66 0.999505
Target:  5'- cGCgGCCGcgcUgGGUGAuGGAGUGugccauGACGCCg -3'
miRNA:   3'- -CGgUGGU---AgUCGCU-UCUUAU------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3849 0.66 0.999689
Target:  5'- cGCCGCCc-CAGaCGuAGAc--GGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUC-GCuUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 98940 0.66 0.999382
Target:  5'- cCCGCCuuauaucuUCAGCGAGcccac-GCGCCa -3'
miRNA:   3'- cGGUGGu-------AGUCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 49176 0.66 0.999607
Target:  5'- uGCCgACCAUggacgCGGCGGccaAGAcgGUAGcccucGCGCCg -3'
miRNA:   3'- -CGG-UGGUA-----GUCGCU---UCU--UAUU-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 84770 0.66 0.999607
Target:  5'- gGCCACgGcCAGC-AGGGc--GACGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGcUUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 49823 0.66 0.999382
Target:  5'- cGCCagcggGCCAUCGGCGAGcagcuuGCGUa -3'
miRNA:   3'- -CGG-----UGGUAGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 132867 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 131904 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.