miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 4842 0.66 0.999382
Target:  5'- gGCCGCC---GGCGAuaauGUAuGGCGCCg -3'
miRNA:   3'- -CGGUGGuagUCGCUucu-UAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 5164 0.72 0.970521
Target:  5'- gGCCAggCAUCGGCGGcgauuucgGGGAacAGCGCCg -3'
miRNA:   3'- -CGGUg-GUAGUCGCU--------UCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 5409 0.7 0.988511
Target:  5'- gGCCGCgCGcUCAGUGAGGA----GCGCg -3'
miRNA:   3'- -CGGUG-GU-AGUCGCUUCUuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 5561 0.69 0.991252
Target:  5'- cGUCGCCGUCcGCGAcGGc-AAAUGCCu -3'
miRNA:   3'- -CGGUGGUAGuCGCUuCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 5645 0.66 0.999607
Target:  5'- cGCCAaagagcCCGUcCAGCGGA---UGcGCGCCg -3'
miRNA:   3'- -CGGU------GGUA-GUCGCUUcuuAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 6136 0.71 0.981076
Target:  5'- cGCCGCCAUCGG-GggGcucgguggcGGUGAcgGCGCg -3'
miRNA:   3'- -CGGUGGUAGUCgCuuC---------UUAUU--UGCGg -5'
6682 5' -47.6 NC_001847.1 + 6373 0.73 0.952117
Target:  5'- aGCCGCUgcggCAGCaGAAGGcgGcaAGCGCCg -3'
miRNA:   3'- -CGGUGGua--GUCG-CUUCUuaU--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 6543 0.66 0.999382
Target:  5'- aGCCGCCGgu-GCGAGGGc---GCGaCCu -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUuauuUGC-GG- -5'
6682 5' -47.6 NC_001847.1 + 6794 0.67 0.998842
Target:  5'- gGCCACCAgCAGCGcguGAucAUGucCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuu-CU--UAUuuGCGg -5'
6682 5' -47.6 NC_001847.1 + 7082 0.73 0.947676
Target:  5'- aGCCGCCcgggcCAGUuguaGGAGAccacGUAGGCGCCa -3'
miRNA:   3'- -CGGUGGua---GUCG----CUUCU----UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 7170 0.69 0.992413
Target:  5'- cGCaGCCGUCGGUGGcguacAGGAUuugGAGCGCg -3'
miRNA:   3'- -CGgUGGUAGUCGCU-----UCUUA---UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 7380 0.73 0.937999
Target:  5'- cGCCGCUGaCAGUGGAGGAcguGGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUCUUau-UUGCGg -5'
6682 5' -47.6 NC_001847.1 + 7822 0.7 0.985146
Target:  5'- gGCCGCC-UCGGCGccGGu----CGCCg -3'
miRNA:   3'- -CGGUGGuAGUCGCuuCUuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8086 0.68 0.997064
Target:  5'- aCCGCCG-CGGCGAGaucGGcgAcgcGGCGCCa -3'
miRNA:   3'- cGGUGGUaGUCGCUU---CUuaU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8088 0.69 0.993449
Target:  5'- uCCACCA-CGGCGAG------GCGCCg -3'
miRNA:   3'- cGGUGGUaGUCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8209 0.66 0.999689
Target:  5'- aGgCGCCGUgcCAGCaGAAGcagcuGCGCCa -3'
miRNA:   3'- -CgGUGGUA--GUCG-CUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8613 0.74 0.909088
Target:  5'- cGCUcgGCCGggGGCGggGGGagGAGCGCCc -3'
miRNA:   3'- -CGG--UGGUagUCGCuuCUUa-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8972 0.68 0.997064
Target:  5'- cGCCGCuCAUCuuGCGGuu-GUGGcCGCCg -3'
miRNA:   3'- -CGGUG-GUAGu-CGCUucuUAUUuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 9588 0.69 0.992413
Target:  5'- gGCCGCgAUCGagccgcagccGCGggGAcgaccGUAGcuGCGCCc -3'
miRNA:   3'- -CGGUGgUAGU----------CGCuuCU-----UAUU--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 9811 0.67 0.998842
Target:  5'- gGCCGCUggcguUCAGCGcGGcuccgaAAACGCCc -3'
miRNA:   3'- -CGGUGGu----AGUCGCuUCuua---UUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.