miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 53307 0.77 0.794834
Target:  5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 35953 0.77 0.794834
Target:  5'- gGCCGCC-UCGcGCGAGGAccacgaGGGCGCCa -3'
miRNA:   3'- -CGGUGGuAGU-CGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4404 0.77 0.804375
Target:  5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60231 0.77 0.804375
Target:  5'- cGUCGUCGUCGGCGAGGGcUAGcacgGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCUUCUuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 93531 0.77 0.813738
Target:  5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 77621 0.77 0.813738
Target:  5'- cGCCGCUG--GGCGAGGAcgGcGCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUUCUuaUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 58103 0.77 0.813738
Target:  5'- cGCCGCUAcuacuUCugcggcGCGgcGGAUGAGCGCCa -3'
miRNA:   3'- -CGGUGGU-----AGu-----CGCuuCUUAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 120032 0.77 0.813738
Target:  5'- cGCCGCCGUCAGgGccgucAGcAUGAGCGCg -3'
miRNA:   3'- -CGGUGGUAGUCgCu----UCuUAUUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 2064 0.76 0.831895
Target:  5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 43533 0.76 0.831895
Target:  5'- aGCCGCag-CcGCGAGGAG-AAGCGCCg -3'
miRNA:   3'- -CGGUGguaGuCGCUUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104877 0.76 0.831895
Target:  5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 61445 0.76 0.832781
Target:  5'- cGCCGCCGggcgCGGCGAGGcggucgcgcagcAGCGCCg -3'
miRNA:   3'- -CGGUGGUa---GUCGCUUCuuau--------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 84238 0.76 0.837184
Target:  5'- gGCCGCCGcgggggaggagggCGGCGAGGAcaaaaaAAACGCCg -3'
miRNA:   3'- -CGGUGGUa------------GUCGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 66366 0.76 0.849228
Target:  5'- gGCCGCCG-CGGCGAuGGAgcu-CGCCu -3'
miRNA:   3'- -CGGUGGUaGUCGCUuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 16971 0.76 0.849228
Target:  5'- cGCgCACCGUcCAGCGcAGGGAgacGCGCCc -3'
miRNA:   3'- -CG-GUGGUA-GUCGC-UUCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67977 0.76 0.857564
Target:  5'- cGCCGCCGagAGCGggGGgccuGUcAugGCCc -3'
miRNA:   3'- -CGGUGGUagUCGCuuCU----UAuUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 109842 0.76 0.857564
Target:  5'- cGCCcUCGUCGGCGAGG-----GCGCCa -3'
miRNA:   3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99281 0.76 0.857564
Target:  5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3'
miRNA:   3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 38083 0.76 0.865669
Target:  5'- gGCCGCCG-CGGuCGggGAAagcagcccGGACGCCg -3'
miRNA:   3'- -CGGUGGUaGUC-GCuuCUUa-------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 70693 0.76 0.865669
Target:  5'- cGCCGCCGcgggCGGCGgcGG--GGGCGCCc -3'
miRNA:   3'- -CGGUGGUa---GUCGCuuCUuaUUUGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.