Results 21 - 40 of 579 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 53307 | 0.77 | 0.794834 |
Target: 5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3' miRNA: 3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 35953 | 0.77 | 0.794834 |
Target: 5'- gGCCGCC-UCGcGCGAGGAccacgaGGGCGCCa -3' miRNA: 3'- -CGGUGGuAGU-CGCUUCUua----UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 4404 | 0.77 | 0.804375 |
Target: 5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3' miRNA: 3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 60231 | 0.77 | 0.804375 |
Target: 5'- cGUCGUCGUCGGCGAGGGcUAGcacgGCGCCg -3' miRNA: 3'- -CGGUGGUAGUCGCUUCUuAUU----UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 93531 | 0.77 | 0.813738 |
Target: 5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3' miRNA: 3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 77621 | 0.77 | 0.813738 |
Target: 5'- cGCCGCUG--GGCGAGGAcgGcGCGCCg -3' miRNA: 3'- -CGGUGGUagUCGCUUCUuaUuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 58103 | 0.77 | 0.813738 |
Target: 5'- cGCCGCUAcuacuUCugcggcGCGgcGGAUGAGCGCCa -3' miRNA: 3'- -CGGUGGU-----AGu-----CGCuuCUUAUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 120032 | 0.77 | 0.813738 |
Target: 5'- cGCCGCCGUCAGgGccgucAGcAUGAGCGCg -3' miRNA: 3'- -CGGUGGUAGUCgCu----UCuUAUUUGCGg -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 2064 | 0.76 | 0.831895 |
Target: 5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 43533 | 0.76 | 0.831895 |
Target: 5'- aGCCGCag-CcGCGAGGAG-AAGCGCCg -3' miRNA: 3'- -CGGUGguaGuCGCUUCUUaUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 104877 | 0.76 | 0.831895 |
Target: 5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 61445 | 0.76 | 0.832781 |
Target: 5'- cGCCGCCGggcgCGGCGAGGcggucgcgcagcAGCGCCg -3' miRNA: 3'- -CGGUGGUa---GUCGCUUCuuau--------UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 84238 | 0.76 | 0.837184 |
Target: 5'- gGCCGCCGcgggggaggagggCGGCGAGGAcaaaaaAAACGCCg -3' miRNA: 3'- -CGGUGGUa------------GUCGCUUCUua----UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 66366 | 0.76 | 0.849228 |
Target: 5'- gGCCGCCG-CGGCGAuGGAgcu-CGCCu -3' miRNA: 3'- -CGGUGGUaGUCGCUuCUUauuuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 16971 | 0.76 | 0.849228 |
Target: 5'- cGCgCACCGUcCAGCGcAGGGAgacGCGCCc -3' miRNA: 3'- -CG-GUGGUA-GUCGC-UUCUUauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 67977 | 0.76 | 0.857564 |
Target: 5'- cGCCGCCGagAGCGggGGgccuGUcAugGCCc -3' miRNA: 3'- -CGGUGGUagUCGCuuCU----UAuUugCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 109842 | 0.76 | 0.857564 |
Target: 5'- cGCCcUCGUCGGCGAGG-----GCGCCa -3' miRNA: 3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 99281 | 0.76 | 0.857564 |
Target: 5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3' miRNA: 3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 38083 | 0.76 | 0.865669 |
Target: 5'- gGCCGCCG-CGGuCGggGAAagcagcccGGACGCCg -3' miRNA: 3'- -CGGUGGUaGUC-GCuuCUUa-------UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 70693 | 0.76 | 0.865669 |
Target: 5'- cGCCGCCGcgggCGGCGgcGG--GGGCGCCc -3' miRNA: 3'- -CGGUGGUa---GUCGCuuCUuaUUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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