miRNA display CGI


Results 1 - 20 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 121293 1.17 0.005516
Target:  5'- cGCCACCAUCAGCGAAGAAUAAACGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCUUCUUAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2284 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 105097 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 58558 0.85 0.42035
Target:  5'- cGCCGCCAgcggCGGCGAAGAucGGGgGCCg -3'
miRNA:   3'- -CGGUGGUa---GUCGCUUCUuaUUUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 130738 0.84 0.448992
Target:  5'- uGCCGCCGUCGGCGucGAcgGcggcgaccguGGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUuaU----------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 30377 0.82 0.540709
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133190 0.82 0.540709
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34299 0.81 0.626976
Target:  5'- cGCgGCCGUCAGCGAGGcuucGGGCGCg -3'
miRNA:   3'- -CGgUGGUAGUCGCUUCuua-UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 85572 0.8 0.648762
Target:  5'- cGCCGCCGUCGGCcGAGAGguuccGCGCa -3'
miRNA:   3'- -CGGUGGUAGUCGcUUCUUauu--UGCGg -5'
6682 5' -47.6 NC_001847.1 + 34467 0.8 0.659638
Target:  5'- gGCCGCCggCGGCGAGGAugcGGACGgCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUua-UUUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 130847 0.8 0.670488
Target:  5'- cGCCGCCAUCgaagccgaGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGGUAG--------UCGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 28034 0.8 0.670488
Target:  5'- cGCCGCCAUCgaagccgaGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGGUAG--------UCGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 27515 0.8 0.681304
Target:  5'- cGCCGCCG-CGGCGgcGGcggGGACGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53257 0.78 0.734475
Target:  5'- cGCCGCC-UCGGCGggGcgcUGcGCGCCc -3'
miRNA:   3'- -CGGUGGuAGUCGCuuCuu-AUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 26799 0.78 0.744851
Target:  5'- cGCCGCCGgu-GCGAGGAAggaggAGACgGCCa -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUUa----UUUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 129612 0.78 0.744851
Target:  5'- cGCCGCCGgu-GCGAGGAAggaggAGACgGCCa -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUUa----UUUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 32827 0.78 0.755116
Target:  5'- cGCgGCCGUCaucuggGGCGAGGAcUAcGACGCCg -3'
miRNA:   3'- -CGgUGGUAG------UCGCUUCUuAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31956 0.78 0.755116
Target:  5'- aGCCugCcgCGGCGgcGGcgggccccGUGGACGCCg -3'
miRNA:   3'- -CGGugGuaGUCGCuuCU--------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 69423 0.78 0.755116
Target:  5'- cGCCGCCc-CGGCGGgcucuGGGAUGAACGCg -3'
miRNA:   3'- -CGGUGGuaGUCGCU-----UCUUAUUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 61058 0.77 0.785128
Target:  5'- cGCgGCCAUCAGCcccAGggUGucuggcgcGACGCCg -3'
miRNA:   3'- -CGgUGGUAGUCGcu-UCuuAU--------UUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.