miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 608 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 774 0.7 0.99049
Target:  5'- cGCCGCCggcggcgccggccucGUCgucguccgacgaGGCGggGGAc-GACGCCg -3'
miRNA:   3'- -CGGUGG---------------UAG------------UCGCuuCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 918 0.67 0.999234
Target:  5'- cGCCGCCcgcCGGCGccGGGAAgcccgAGcccGCGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGC--UUCUUa----UU---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 1486 0.68 0.995894
Target:  5'- aGCCGCag-CGGCGGcgccucGGggUAGA-GCCg -3'
miRNA:   3'- -CGGUGguaGUCGCU------UCuuAUUUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 2064 0.76 0.831895
Target:  5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2126 0.69 0.994368
Target:  5'- gGCCAgCGccUCGGgGucGAAggcGAGCGCCg -3'
miRNA:   3'- -CGGUgGU--AGUCgCuuCUUa--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2284 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2366 0.68 0.996519
Target:  5'- gGCCG-CGUCGGCGgcGGcgGcuuuucgccGGCGCCu -3'
miRNA:   3'- -CGGUgGUAGUCGCuuCUuaU---------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2445 0.66 0.999341
Target:  5'- cGCCAgCcgCAGCGAgcucccgaucgagcGGGcgGcGGCGCCc -3'
miRNA:   3'- -CGGUgGuaGUCGCU--------------UCUuaU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2489 0.67 0.998292
Target:  5'- cGCCGCCGU--GUGAAGAcgucgcGAGgGCCg -3'
miRNA:   3'- -CGGUGGUAguCGCUUCUua----UUUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 2893 0.67 0.998292
Target:  5'- cGCCGCgCGUCgaguaccgcgcgAGCGggGccacGGUccGCGCCg -3'
miRNA:   3'- -CGGUG-GUAG------------UCGCuuC----UUAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2963 0.7 0.989954
Target:  5'- gGCCGCC-UCGGCGcgc----AGCGCCg -3'
miRNA:   3'- -CGGUGGuAGUCGCuucuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3204 0.69 0.994281
Target:  5'- cGCCGCCAUCgccGGCGcacgugccuccGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---UCGCuucuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3235 0.67 0.999055
Target:  5'- cGCCGCCcgCgccgugcucgccGGCGGcAGGGgcgccGGCGCCg -3'
miRNA:   3'- -CGGUGGuaG------------UCGCU-UCUUau---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3401 0.66 0.999689
Target:  5'- uCCGCaagCAGCGGgAGAGcagcccggGGGCGCCa -3'
miRNA:   3'- cGGUGguaGUCGCU-UCUUa-------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3579 0.72 0.967328
Target:  5'- aGCCGCCGg-GGCuGAGGAAgucGGCGUCg -3'
miRNA:   3'- -CGGUGGUagUCG-CUUCUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3849 0.66 0.999689
Target:  5'- cGCCGCCc-CAGaCGuAGAc--GGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUC-GCuUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3941 0.75 0.895644
Target:  5'- uGgCGCCG-CGGCGggGG--GGGCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCuuCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3964 0.66 0.999689
Target:  5'- cGUCuCCggCGGCGAGG-----GCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4404 0.77 0.804375
Target:  5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.