Results 1 - 20 of 579 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 608 | 0.66 | 0.999674 |
Target: 5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3' miRNA: 3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 774 | 0.7 | 0.99049 |
Target: 5'- cGCCGCCggcggcgccggccucGUCgucguccgacgaGGCGggGGAc-GACGCCg -3' miRNA: 3'- -CGGUGG---------------UAG------------UCGCuuCUUauUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 918 | 0.67 | 0.999234 |
Target: 5'- cGCCGCCcgcCGGCGccGGGAAgcccgAGcccGCGCCc -3' miRNA: 3'- -CGGUGGua-GUCGC--UUCUUa----UU---UGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 1486 | 0.68 | 0.995894 |
Target: 5'- aGCCGCag-CGGCGGcgccucGGggUAGA-GCCg -3' miRNA: 3'- -CGGUGguaGUCGCU------UCuuAUUUgCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2064 | 0.76 | 0.831895 |
Target: 5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2126 | 0.69 | 0.994368 |
Target: 5'- gGCCAgCGccUCGGgGucGAAggcGAGCGCCg -3' miRNA: 3'- -CGGUgGU--AGUCgCuuCUUa--UUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2284 | 0.85 | 0.411051 |
Target: 5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3' miRNA: 3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2366 | 0.68 | 0.996519 |
Target: 5'- gGCCG-CGUCGGCGgcGGcgGcuuuucgccGGCGCCu -3' miRNA: 3'- -CGGUgGUAGUCGCuuCUuaU---------UUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2445 | 0.66 | 0.999341 |
Target: 5'- cGCCAgCcgCAGCGAgcucccgaucgagcGGGcgGcGGCGCCc -3' miRNA: 3'- -CGGUgGuaGUCGCU--------------UCUuaU-UUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2489 | 0.67 | 0.998292 |
Target: 5'- cGCCGCCGU--GUGAAGAcgucgcGAGgGCCg -3' miRNA: 3'- -CGGUGGUAguCGCUUCUua----UUUgCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2893 | 0.67 | 0.998292 |
Target: 5'- cGCCGCgCGUCgaguaccgcgcgAGCGggGccacGGUccGCGCCg -3' miRNA: 3'- -CGGUG-GUAG------------UCGCuuC----UUAuuUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 2963 | 0.7 | 0.989954 |
Target: 5'- gGCCGCC-UCGGCGcgc----AGCGCCg -3' miRNA: 3'- -CGGUGGuAGUCGCuucuuauUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3204 | 0.69 | 0.994281 |
Target: 5'- cGCCGCCAUCgccGGCGcacgugccuccGCGCCg -3' miRNA: 3'- -CGGUGGUAG---UCGCuucuuauu---UGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3235 | 0.67 | 0.999055 |
Target: 5'- cGCCGCCcgCgccgugcucgccGGCGGcAGGGgcgccGGCGCCg -3' miRNA: 3'- -CGGUGGuaG------------UCGCU-UCUUau---UUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3401 | 0.66 | 0.999689 |
Target: 5'- uCCGCaagCAGCGGgAGAGcagcccggGGGCGCCa -3' miRNA: 3'- cGGUGguaGUCGCU-UCUUa-------UUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3579 | 0.72 | 0.967328 |
Target: 5'- aGCCGCCGg-GGCuGAGGAAgucGGCGUCg -3' miRNA: 3'- -CGGUGGUagUCG-CUUCUUau-UUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3849 | 0.66 | 0.999689 |
Target: 5'- cGCCGCCc-CAGaCGuAGAc--GGCGCCg -3' miRNA: 3'- -CGGUGGuaGUC-GCuUCUuauUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3941 | 0.75 | 0.895644 |
Target: 5'- uGgCGCCG-CGGCGggGG--GGGCGCCg -3' miRNA: 3'- -CgGUGGUaGUCGCuuCUuaUUUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 3964 | 0.66 | 0.999689 |
Target: 5'- cGUCuCCggCGGCGAGG-----GCGCCg -3' miRNA: 3'- -CGGuGGuaGUCGCUUCuuauuUGCGG- -5' |
|||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 4404 | 0.77 | 0.804375 |
Target: 5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3' miRNA: 3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home