Results 1 - 20 of 579 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 134381 | 0.69 | 0.993049 |
Target: 5'- cGCCGCCggCGGCGGGccggccuCGCCc -3' miRNA: 3'- -CGGUGGuaGUCGCUUcuuauuuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 134158 | 0.75 | 0.881158 |
Target: 5'- uGCCGCCGcCGGCGGcGGAAgcccCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCU-UCUUauuuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 134095 | 0.67 | 0.998842 |
Target: 5'- cGCCGCCGcuugcUCuGGCGAgcagagguccAGAAUGGA-GCCc -3' miRNA: 3'- -CGGUGGU-----AG-UCGCU----------UCUUAUUUgCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133922 | 0.68 | 0.996519 |
Target: 5'- gGCCugCGggCGGCGcgcgcuGGAGcuGGCGCCc -3' miRNA: 3'- -CGGugGUa-GUCGCu-----UCUUauUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133874 | 0.66 | 0.999689 |
Target: 5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3' miRNA: 3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133874 | 0.69 | 0.99518 |
Target: 5'- aGCCACUA-CAGU--AGAGUAagaAACGCUg -3' miRNA: 3'- -CGGUGGUaGUCGcuUCUUAU---UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133532 | 0.67 | 0.99859 |
Target: 5'- uGCUGCCG-CGGCGcAGu----GCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCuUCuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133425 | 0.66 | 0.999607 |
Target: 5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3' miRNA: 3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133284 | 0.68 | 0.997943 |
Target: 5'- aGCCGCgCGgugcgcucCGGCGcAGAGUGcgUGCCg -3' miRNA: 3'- -CGGUG-GUa-------GUCGCuUCUUAUuuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133192 | 0.67 | 0.999234 |
Target: 5'- gGCUGCCcUCGcUGGAGGAgcucuGCGCCg -3' miRNA: 3'- -CGGUGGuAGUcGCUUCUUauu--UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133190 | 0.82 | 0.540709 |
Target: 5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3' miRNA: 3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 133085 | 0.69 | 0.99518 |
Target: 5'- cGCCACCGcugCGGCGgcGc---GugGCCu -3' miRNA: 3'- -CGGUGGUa--GUCGCuuCuuauUugCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132867 | 0.66 | 0.999689 |
Target: 5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132724 | 0.72 | 0.969272 |
Target: 5'- gGCCGCCGcgggggccccUCGGgGGAGGAcgacucugggccgAGGCGCCg -3' miRNA: 3'- -CGGUGGU----------AGUCgCUUCUUa------------UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132596 | 0.73 | 0.937999 |
Target: 5'- gGCCGCCccggccCGGCGgcGG--GAGCGCCg -3' miRNA: 3'- -CGGUGGua----GUCGCuuCUuaUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132491 | 0.74 | 0.927247 |
Target: 5'- aGCCGCCG--GGCGAAG-----GCGCCg -3' miRNA: 3'- -CGGUGGUagUCGCUUCuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132373 | 0.72 | 0.963897 |
Target: 5'- gGCCGCC---GGCGggGGcgccGGCGCCg -3' miRNA: 3'- -CGGUGGuagUCGCuuCUuau-UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 132049 | 0.68 | 0.996519 |
Target: 5'- gGCCGCUAUC-GUGggGG----GCGUCa -3' miRNA: 3'- -CGGUGGUAGuCGCuuCUuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 131922 | 0.71 | 0.973485 |
Target: 5'- aGCCGCgG-CGGCGcGGAGgcacguGCGCCg -3' miRNA: 3'- -CGGUGgUaGUCGCuUCUUauu---UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 131904 | 0.66 | 0.999607 |
Target: 5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3' miRNA: 3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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