miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 65646 0.66 0.999382
Target:  5'- cGCCGCCAaCGGCc--GcGUGcGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGcuuCuUAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4842 0.66 0.999382
Target:  5'- gGCCGCC---GGCGAuaauGUAuGGCGCCg -3'
miRNA:   3'- -CGGUGGuagUCGCUucu-UAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126426 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 61657 0.66 0.999326
Target:  5'- cGCCACCG-CGGCcgccauGAAGGuucgagacauGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCG------CUUCUuauu------UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 98940 0.66 0.999382
Target:  5'- cCCGCCuuauaucuUCAGCGAGcccac-GCGCCa -3'
miRNA:   3'- cGGUGGu-------AGUCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48784 0.66 0.999569
Target:  5'- cGCCGCCucGUCuGCGGGcgccucgccGGCGCCa -3'
miRNA:   3'- -CGGUGG--UAGuCGCUUcuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99470 0.66 0.999548
Target:  5'- cGCCGCUcggggccaagAUCAGCGcgauccgcggaaauuAgccuGGAGUuuGCGCCg -3'
miRNA:   3'- -CGGUGG----------UAGUCGC---------------U----UCUUAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 49823 0.66 0.999382
Target:  5'- cGCCagcggGCCAUCGGCGAGcagcuuGCGUa -3'
miRNA:   3'- -CGG-----UGGUAGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 94183 0.66 0.999505
Target:  5'- gGCCGCC-UCGcGCGGgcAGuucgAGGCGCUg -3'
miRNA:   3'- -CGGUGGuAGU-CGCU--UCuua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2445 0.66 0.999341
Target:  5'- cGCCAgCcgCAGCGAgcucccgaucgagcGGGcgGcGGCGCCc -3'
miRNA:   3'- -CGGUgGuaGUCGCU--------------UCUuaU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 49176 0.66 0.999607
Target:  5'- uGCCgACCAUggacgCGGCGGccaAGAcgGUAGcccucGCGCCg -3'
miRNA:   3'- -CGG-UGGUA-----GUCGCU---UCU--UAUU-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 75627 0.66 0.999505
Target:  5'- uGCCGCCccacgaCGGCGAugccGGAGccggAGGCGCg -3'
miRNA:   3'- -CGGUGGua----GUCGCU----UCUUa---UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 71215 0.66 0.999505
Target:  5'- cGCgGCCGcgcUgGGUGAuGGAGUGugccauGACGCCg -3'
miRNA:   3'- -CGgUGGU---AgUCGCU-UCUUAU------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 109356 0.66 0.999382
Target:  5'- aGCCGCCGgu-GCGAGGGc---GCGaCCu -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUuauuUGC-GG- -5'
6682 5' -47.6 NC_001847.1 + 72913 0.66 0.999382
Target:  5'- cGCCACgAggcggucggCGGCGucGggUuuACGCUc -3'
miRNA:   3'- -CGGUGgUa--------GUCGCuuCuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 13538 0.66 0.999422
Target:  5'- uGCCGCUAggCAGCGcgacgcugcacGACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCuucuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 36373 0.66 0.999382
Target:  5'- cGCCGCCG-CGGCccGGGcagcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGcuUCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 46215 0.66 0.999505
Target:  5'- cGCCGCCGggccggCcGCGggGAAaucuCGCa -3'
miRNA:   3'- -CGGUGGUa-----GuCGCuuCUUauuuGCGg -5'
6682 5' -47.6 NC_001847.1 + 87564 0.66 0.999505
Target:  5'- cGCCACUAcgccUCgGGCGAGGugcccGUGcucaccgaggccGGCGCCg -3'
miRNA:   3'- -CGGUGGU----AG-UCGCUUCu----UAU------------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 54696 0.66 0.999494
Target:  5'- cGCgACCAgCGGCGGgagcuGGAaaagacccugcgcGUGAGCGUCu -3'
miRNA:   3'- -CGgUGGUaGUCGCU-----UCU-------------UAUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.