Results 1 - 20 of 579 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6682 | 5' | -47.6 | NC_001847.1 | + | 98940 | 0.66 | 0.999382 |
Target: 5'- cCCGCCuuauaucuUCAGCGAGcccac-GCGCCa -3' miRNA: 3'- cGGUGGu-------AGUCGCUUcuuauuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 72913 | 0.66 | 0.999382 |
Target: 5'- cGCCACgAggcggucggCGGCGucGggUuuACGCUc -3' miRNA: 3'- -CGGUGgUa--------GUCGCuuCuuAuuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 126426 | 0.66 | 0.999588 |
Target: 5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3' miRNA: 3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 4842 | 0.66 | 0.999382 |
Target: 5'- gGCCGCC---GGCGAuaauGUAuGGCGCCg -3' miRNA: 3'- -CGGUGGuagUCGCUucu-UAU-UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 65646 | 0.66 | 0.999382 |
Target: 5'- cGCCGCCAaCGGCc--GcGUGcGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGcuuCuUAUuUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 13538 | 0.66 | 0.999422 |
Target: 5'- uGCCGCUAggCAGCGcgacgcugcacGACGCCg -3' miRNA: 3'- -CGGUGGUa-GUCGCuucuuau----UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 49823 | 0.66 | 0.999382 |
Target: 5'- cGCCagcggGCCAUCGGCGAGcagcuuGCGUa -3' miRNA: 3'- -CGG-----UGGUAGUCGCUUcuuauuUGCGg -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 49176 | 0.66 | 0.999607 |
Target: 5'- uGCCgACCAUggacgCGGCGGccaAGAcgGUAGcccucGCGCCg -3' miRNA: 3'- -CGG-UGGUA-----GUCGCU---UCU--UAUU-----UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 87564 | 0.66 | 0.999505 |
Target: 5'- cGCCACUAcgccUCgGGCGAGGugcccGUGcucaccgaggccGGCGCCg -3' miRNA: 3'- -CGGUGGU----AG-UCGCUUCu----UAU------------UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 48784 | 0.66 | 0.999569 |
Target: 5'- cGCCGCCucGUCuGCGGGcgccucgccGGCGCCa -3' miRNA: 3'- -CGGUGG--UAGuCGCUUcuuau----UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 75627 | 0.66 | 0.999505 |
Target: 5'- uGCCGCCccacgaCGGCGAugccGGAGccggAGGCGCg -3' miRNA: 3'- -CGGUGGua----GUCGCU----UCUUa---UUUGCGg -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 109356 | 0.66 | 0.999382 |
Target: 5'- aGCCGCCGgu-GCGAGGGc---GCGaCCu -3' miRNA: 3'- -CGGUGGUaguCGCUUCUuauuUGC-GG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 46215 | 0.66 | 0.999505 |
Target: 5'- cGCCGCCGggccggCcGCGggGAAaucuCGCa -3' miRNA: 3'- -CGGUGGUa-----GuCGCuuCUUauuuGCGg -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 36373 | 0.66 | 0.999382 |
Target: 5'- cGCCGCCG-CGGCccGGGcagcgcGCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGcuUCUuauu--UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 71215 | 0.66 | 0.999505 |
Target: 5'- cGCgGCCGcgcUgGGUGAuGGAGUGugccauGACGCCg -3' miRNA: 3'- -CGgUGGU---AgUCGCU-UCUUAU------UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 2445 | 0.66 | 0.999341 |
Target: 5'- cGCCAgCcgCAGCGAgcucccgaucgagcGGGcgGcGGCGCCc -3' miRNA: 3'- -CGGUgGuaGUCGCU--------------UCUuaU-UUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 94183 | 0.66 | 0.999505 |
Target: 5'- gGCCGCC-UCGcGCGGgcAGuucgAGGCGCUg -3' miRNA: 3'- -CGGUGGuAGU-CGCU--UCuua-UUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 54696 | 0.66 | 0.999494 |
Target: 5'- cGCgACCAgCGGCGGgagcuGGAaaagacccugcgcGUGAGCGUCu -3' miRNA: 3'- -CGgUGGUaGUCGCU-----UCU-------------UAUUUGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 61657 | 0.66 | 0.999326 |
Target: 5'- cGCCACCG-CGGCcgccauGAAGGuucgagacauGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCG------CUUCUuauu------UGCGG- -5' |
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6682 | 5' | -47.6 | NC_001847.1 | + | 99470 | 0.66 | 0.999548 |
Target: 5'- cGCCGCUcggggccaagAUCAGCGcgauccgcggaaauuAgccuGGAGUuuGCGCCg -3' miRNA: 3'- -CGGUGG----------UAGUCGC---------------U----UCUUAuuUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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