miRNA display CGI


Results 1 - 20 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 16703 0.75 0.881158
Target:  5'- gGCCGCCAcCAGCaGGAGccccacGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCG-CUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 4404 0.77 0.804375
Target:  5'- cGCCGCCGUCgacgccgacGGCGgcGAGcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------UCGCuuCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60231 0.77 0.804375
Target:  5'- cGUCGUCGUCGGCGAGGGcUAGcacgGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCUUCUuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 77621 0.77 0.813738
Target:  5'- cGCCGCUG--GGCGAGGAcgGcGCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGCUUCUuaUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104877 0.76 0.831895
Target:  5'- cGCCGCCG-CAGCGguGGcggcGAGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua--UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 84238 0.76 0.837184
Target:  5'- gGCCGCCGcgggggaggagggCGGCGAGGAcaaaaaAAACGCCg -3'
miRNA:   3'- -CGGUGGUa------------GUCGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 16971 0.76 0.849228
Target:  5'- cGCgCACCGUcCAGCGcAGGGAgacGCGCCc -3'
miRNA:   3'- -CG-GUGGUA-GUCGC-UUCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67977 0.76 0.857564
Target:  5'- cGCCGCCGagAGCGggGGgccuGUcAugGCCc -3'
miRNA:   3'- -CGGUGGUagUCGCuuCU----UAuUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 100950 0.76 0.865669
Target:  5'- aGCCGCCGcgguaaCAGCGggGcuc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCuuCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 35953 0.77 0.794834
Target:  5'- gGCCGCC-UCGcGCGAGGAccacgaGGGCGCCa -3'
miRNA:   3'- -CGGUGGuAGU-CGCUUCUua----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31956 0.78 0.755116
Target:  5'- aGCCugCcgCGGCGgcGGcgggccccGUGGACGCCg -3'
miRNA:   3'- -CGGugGuaGUCGCuuCU--------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 129612 0.78 0.744851
Target:  5'- cGCCGCCGgu-GCGAGGAAggaggAGACgGCCa -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUUa----UUUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 105097 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133190 0.82 0.540709
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34299 0.81 0.626976
Target:  5'- cGCgGCCGUCAGCGAGGcuucGGGCGCg -3'
miRNA:   3'- -CGgUGGUAGUCGCUUCuua-UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 85572 0.8 0.648762
Target:  5'- cGCCGCCGUCGGCcGAGAGguuccGCGCa -3'
miRNA:   3'- -CGGUGGUAGUCGcUUCUUauu--UGCGg -5'
6682 5' -47.6 NC_001847.1 + 34467 0.8 0.659638
Target:  5'- gGCCGCCggCGGCGAGGAugcGGACGgCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUua-UUUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 130847 0.8 0.670488
Target:  5'- cGCCGCCAUCgaagccgaGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGGUAG--------UCGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 27515 0.8 0.681304
Target:  5'- cGCCGCCG-CGGCGgcGGcggGGACGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCUua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53257 0.78 0.734475
Target:  5'- cGCCGCC-UCGGCGggGcgcUGcGCGCCc -3'
miRNA:   3'- -CGGUGGuAGUCGCuuCuu-AUuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.