miRNA display CGI


Results 1 - 20 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 29091 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 119045 0.66 0.999718
Target:  5'- cGUCACUcgagacggcgcgcgaAUCAGCGuacuGGAGgcgcccagcagAGGCGCCg -3'
miRNA:   3'- -CGGUGG---------------UAGUCGCu---UCUUa----------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 118917 0.66 0.999689
Target:  5'- gGCCgagGCCGggacGCGGAGGcUGcAACGCCg -3'
miRNA:   3'- -CGG---UGGUagu-CGCUUCUuAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3964 0.66 0.999689
Target:  5'- cGUCuCCggCGGCGAGG-----GCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 608 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 113026 0.66 0.999689
Target:  5'- cGCCGCCG-C-GCGucug--GGACGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuucuuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 37481 0.66 0.999689
Target:  5'- gGCCcgGCCuggCAGCGgcGggUcuGgGCCc -3'
miRNA:   3'- -CGG--UGGua-GUCGCuuCuuAuuUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 34896 0.66 0.999689
Target:  5'- uGCCACaAUUGGCGcuuuGGggUcu-CGCCa -3'
miRNA:   3'- -CGGUGgUAGUCGCu---UCuuAuuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 88239 0.66 0.999607
Target:  5'- aGCCgagGCCGgcgCGGCGcGGG----GCGCCg -3'
miRNA:   3'- -CGG---UGGUa--GUCGCuUCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 69893 0.66 0.999607
Target:  5'- gGCCGCgGgcccgGGUGgcGGAaAAGCGCCg -3'
miRNA:   3'- -CGGUGgUag---UCGCuuCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2284 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104208 0.66 0.999689
Target:  5'- -gCGCCGUUuauGCGAAGGccuccCGCCg -3'
miRNA:   3'- cgGUGGUAGu--CGCUUCUuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 93093 0.66 0.999607
Target:  5'- cGCgCGCCcgCaaAGCGggGcgggcuAUAAagGCGCCg -3'
miRNA:   3'- -CG-GUGGuaG--UCGCuuCu-----UAUU--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 89594 0.66 0.999607
Target:  5'- cGCCGCCG-CGGUGAAcgcgcuGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 118722 0.66 0.999607
Target:  5'- cGUCGCCGgccucgCAGaCGcGGGAaAAGCGCUg -3'
miRNA:   3'- -CGGUGGUa-----GUC-GCuUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53939 0.66 0.999607
Target:  5'- aGCCugCAUCuacgcgcGCGccGGcu-GGCGCCg -3'
miRNA:   3'- -CGGugGUAGu------CGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 30054 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 58063 0.66 0.999642
Target:  5'- gGCCGCCgAUUGGCGcgcgcgc-GCGCCg -3'
miRNA:   3'- -CGGUGG-UAGUCGCuucuuauuUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.