miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 23613 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53939 0.66 0.999607
Target:  5'- aGCCugCAUCuacgcgcGCGccGGcu-GGCGCCg -3'
miRNA:   3'- -CGGugGUAGu------CGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 608 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 104208 0.66 0.999689
Target:  5'- -gCGCCGUUuauGCGAAGGccuccCGCCg -3'
miRNA:   3'- cgGUGGUAGu--CGCUUCUuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 35235 0.66 0.999494
Target:  5'- cGCCugCcUCgAGgGAGGAggGUAGagcguucGCGCCg -3'
miRNA:   3'- -CGGugGuAG-UCgCUUCU--UAUU-------UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60057 0.66 0.999505
Target:  5'- cGCCGCCGacgaUCuaauGGUGgcGcuAGUGAugGCCg -3'
miRNA:   3'- -CGGUGGU----AG----UCGCuuC--UUAUUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 118722 0.66 0.999607
Target:  5'- cGUCGCCGgccucgCAGaCGcGGGAaAAGCGCUg -3'
miRNA:   3'- -CGGUGGUa-----GUC-GCuUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 113026 0.66 0.999689
Target:  5'- cGCCGCCG-C-GCGucug--GGACGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuucuuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 74164 0.66 0.999505
Target:  5'- cGgCGCCGUgGGCGcgcgcAGcggGGACGCCa -3'
miRNA:   3'- -CgGUGGUAgUCGCu----UCuuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 118917 0.66 0.999689
Target:  5'- gGCCgagGCCGggacGCGGAGGcUGcAACGCCg -3'
miRNA:   3'- -CGG---UGGUagu-CGCUUCUuAU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 69893 0.66 0.999607
Target:  5'- gGCCGCgGgcccgGGUGgcGGAaAAGCGCCg -3'
miRNA:   3'- -CGGUGgUag---UCGCuuCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48575 0.66 0.999548
Target:  5'- cGCCGCCGUCuucggcgccguccucGGCGucccccuUAAgccGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCuucuu--AUU---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 88239 0.66 0.999607
Target:  5'- aGCCgagGCCGgcgCGGCGcGGG----GCGCCg -3'
miRNA:   3'- -CGG---UGGUa--GUCGCuUCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 58063 0.66 0.999642
Target:  5'- gGCCGCCgAUUGGCGcgcgcgc-GCGCCg -3'
miRNA:   3'- -CGGUGG-UAGUCGCuucuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 30054 0.66 0.999689
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101853 0.66 0.999382
Target:  5'- cGCCugCcgCGagcaggucGCGGAGGAgcu-CGCCu -3'
miRNA:   3'- -CGGugGuaGU--------CGCUUCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 71402 0.66 0.999471
Target:  5'- cGCCGCCAggcggcgcuguugcUCGGCcGggGGGaGggUGCa -3'
miRNA:   3'- -CGGUGGU--------------AGUCG-CuuCUUaUuuGCGg -5'
6682 5' -47.6 NC_001847.1 + 79988 0.66 0.999505
Target:  5'- aGCCGCUgcgCGGCGGu-----GACGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGCUucuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101451 0.66 0.999505
Target:  5'- cGCCGCCGcgCcGCGAGcgccu-GCGCCu -3'
miRNA:   3'- -CGGUGGUa-GuCGCUUcuuauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.