miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 119045 0.66 0.999718
Target:  5'- cGUCACUcgagacggcgcgcgaAUCAGCGuacuGGAGgcgcccagcagAGGCGCCg -3'
miRNA:   3'- -CGGUGG---------------UAGUCGCu---UCUUa----------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101953 0.66 0.999505
Target:  5'- cGCCGCCAagUCGgGCGcAGAGccGGCcaGCCg -3'
miRNA:   3'- -CGGUGGU--AGU-CGCuUCUUauUUG--CGG- -5'
6682 5' -47.6 NC_001847.1 + 115728 0.66 0.999505
Target:  5'- uGCCGCCAcgGGCGcgc--UGGugGCCa -3'
miRNA:   3'- -CGGUGGUagUCGCuucuuAUUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 30612 0.66 0.999607
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 93093 0.66 0.999607
Target:  5'- cGCgCGCCcgCaaAGCGggGcgggcuAUAAagGCGCCg -3'
miRNA:   3'- -CG-GUGGuaG--UCGCuuCu-----UAUU--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 68692 0.66 0.999471
Target:  5'- aGUCACCAgcagggggUUAGCGAcgucaauucccuggAGggUGuACGUCa -3'
miRNA:   3'- -CGGUGGU--------AGUCGCU--------------UCuuAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 72058 0.66 0.999505
Target:  5'- cGCgGCgGUUGGCGcgcAGAAgcuGCGCCc -3'
miRNA:   3'- -CGgUGgUAGUCGCu--UCUUauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 34896 0.66 0.999689
Target:  5'- uGCCACaAUUGGCGcuuuGGggUcu-CGCCa -3'
miRNA:   3'- -CGGUGgUAGUCGCu---UCuuAuuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 110342 0.66 0.999505
Target:  5'- cCCACC-UCGaaggccGCGAGGGcguuguGUGGACGCUc -3'
miRNA:   3'- cGGUGGuAGU------CGCUUCU------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 23613 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 37481 0.66 0.999689
Target:  5'- gGCCcgGCCuggCAGCGgcGggUcuGgGCCc -3'
miRNA:   3'- -CGG--UGGua-GUCGCuuCuuAuuUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 83839 0.66 0.999382
Target:  5'- cGCCGCCG-CAGCacgggcuGGAAUu-GCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGcu-----UCUUAuuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 99604 0.66 0.999435
Target:  5'- cGCCGCC-UCGGCagccacgaccucgccGAGGAu---GCGCUc -3'
miRNA:   3'- -CGGUGGuAGUCG---------------CUUCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101451 0.66 0.999505
Target:  5'- cGCCGCCGcgCcGCGAGcgccu-GCGCCu -3'
miRNA:   3'- -CGGUGGUa-GuCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 29091 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 89594 0.66 0.999607
Target:  5'- cGCCGCCG-CGGUGAAcgcgcuGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 74695 0.66 0.999597
Target:  5'- cGCCcgACgGgggCAGCGccGAcgcgcgcGUGGACGCCg -3'
miRNA:   3'- -CGG--UGgUa--GUCGCuuCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 74281 0.66 0.999505
Target:  5'- gGCCGCCcUC-GCGcuGGAcgcccuGGCGCCg -3'
miRNA:   3'- -CGGUGGuAGuCGCuuCUUau----UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.