miRNA display CGI


Results 41 - 60 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 37481 0.66 0.999689
Target:  5'- gGCCcgGCCuggCAGCGgcGggUcuGgGCCc -3'
miRNA:   3'- -CGG--UGGua-GUCGCuuCuuAuuUgCGG- -5'
6682 5' -47.6 NC_001847.1 + 83839 0.66 0.999382
Target:  5'- cGCCGCCG-CAGCacgggcuGGAAUu-GCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGcu-----UCUUAuuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 918 0.67 0.999234
Target:  5'- cGCCGCCcgcCGGCGccGGGAAgcccgAGcccGCGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGC--UUCUUa----UU---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 81282 0.67 0.999234
Target:  5'- cGCgGCgGUCGGCGccGcc--AGCGCCg -3'
miRNA:   3'- -CGgUGgUAGUCGCuuCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99604 0.66 0.999435
Target:  5'- cGCCGCC-UCGGCagccacgaccucgccGAGGAu---GCGCUc -3'
miRNA:   3'- -CGGUGGuAGUCG---------------CUUCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 29091 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 31061 0.66 0.999689
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 74695 0.66 0.999597
Target:  5'- cGCCcgACgGgggCAGCGccGAcgcgcgcGUGGACGCCg -3'
miRNA:   3'- -CGG--UGgUa--GUCGCuuCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101953 0.66 0.999505
Target:  5'- cGCCGCCAagUCGgGCGcAGAGccGGCcaGCCg -3'
miRNA:   3'- -CGGUGGU--AGU-CGCuUCUUauUUG--CGG- -5'
6682 5' -47.6 NC_001847.1 + 101451 0.66 0.999505
Target:  5'- cGCCGCCGcgCcGCGAGcgccu-GCGCCu -3'
miRNA:   3'- -CGGUGGUa-GuCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53939 0.66 0.999607
Target:  5'- aGCCugCAUCuacgcgcGCGccGGcu-GGCGCCg -3'
miRNA:   3'- -CGGugGUAGu------CGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 3964 0.66 0.999689
Target:  5'- cGUCuCCggCGGCGAGG-----GCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 110960 0.66 0.999382
Target:  5'- gGCCACCAgcgccacgcUguGCGAGuacGGcUGcGCGCCg -3'
miRNA:   3'- -CGGUGGU---------AguCGCUU---CUuAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53712 0.66 0.999382
Target:  5'- cGCCGCCGgcggCucGCGggGcgGAUcgGCGCg -3'
miRNA:   3'- -CGGUGGUa---Gu-CGCuuC--UUAuuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 71402 0.66 0.999471
Target:  5'- cGCCGCCAggcggcgcuguugcUCGGCcGggGGGaGggUGCa -3'
miRNA:   3'- -CGGUGGU--------------AGUCG-CuuCUUaUuuGCGg -5'
6682 5' -47.6 NC_001847.1 + 69506 0.66 0.999326
Target:  5'- cGCgGCCGUUGGCGGcgcAGccaagcccuGCGCCg -3'
miRNA:   3'- -CGgUGGUAGUCGCU---UCuuauu----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 2284 0.85 0.411051
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 116605 0.67 0.999234
Target:  5'- uGCCGCUcugCGGCGcGGAcgGcggcGCGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGCuUCUuaUu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 64904 0.66 0.999355
Target:  5'- cGgCACCAgCAGCGAcaucggcGGCGCCu -3'
miRNA:   3'- -CgGUGGUaGUCGCUucuuau-UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.