miRNA display CGI


Results 41 - 60 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 10383 0.69 0.992192
Target:  5'- cGCCGCUcgCGGCGggGccgcuuuauGACgGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuau-----UUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 10596 0.67 0.998819
Target:  5'- cGCUGCUcUCGGCaGAcgcAGAcgcgguaGUGGGCGCCa -3'
miRNA:   3'- -CGGUGGuAGUCG-CU---UCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 11417 0.66 0.999689
Target:  5'- gGCCcCCGUCgccgAGCGAAGu----GCuGCCg -3'
miRNA:   3'- -CGGuGGUAG----UCGCUUCuuauuUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 11530 0.67 0.998292
Target:  5'- aGCCGCCGggugCuGCGuucgcgucuGGAGU--GCGCCc -3'
miRNA:   3'- -CGGUGGUa---GuCGCu--------UCUUAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 11656 0.69 0.99518
Target:  5'- aGCCuuCCggCGGCGguGAAggGGGCGCUg -3'
miRNA:   3'- -CGGu-GGuaGUCGCuuCUUa-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 11809 0.69 0.993351
Target:  5'- uGCUuuCCGUCAgacggcacagcgcGCGggGGGggGGGCGCCu -3'
miRNA:   3'- -CGGu-GGUAGU-------------CGCuuCUUa-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 11957 0.68 0.997943
Target:  5'- cGCCGCUagggAUgGGCGGc---UGAGCGCCg -3'
miRNA:   3'- -CGGUGG----UAgUCGCUucuuAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 12026 0.69 0.991252
Target:  5'- cGCC-CCucugccCGGCGGAGcgcUGGACGCCc -3'
miRNA:   3'- -CGGuGGua----GUCGCUUCuu-AUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 12235 0.66 0.999382
Target:  5'- cGCaCACCcgaaCGGCGAGGGcugcGAUGCCc -3'
miRNA:   3'- -CG-GUGGua--GUCGCUUCUuau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 12640 0.68 0.995894
Target:  5'- gGCCGCUgcggCuGCGggGGAgagGAGCGUg -3'
miRNA:   3'- -CGGUGGua--GuCGCuuCUUa--UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 13020 0.69 0.994368
Target:  5'- cGCCgGCCGUC-GCGAccugcAGcGUcAGCGCCa -3'
miRNA:   3'- -CGG-UGGUAGuCGCU-----UCuUAuUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 13494 0.68 0.997064
Target:  5'- gGCgGCCuUCcGCGAAGugc--GCGCCa -3'
miRNA:   3'- -CGgUGGuAGuCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 13538 0.66 0.999422
Target:  5'- uGCCGCUAggCAGCGcgacgcugcacGACGCCg -3'
miRNA:   3'- -CGGUGGUa-GUCGCuucuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 13547 0.69 0.994368
Target:  5'- cGCCGCCGgggCGGCGcgguGggUugcauugccAAAUGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCuu--CuuA---------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14221 0.7 0.988511
Target:  5'- gGCCgGCCGggGGCGugguGAGGGcAAACGCCg -3'
miRNA:   3'- -CGG-UGGUagUCGC----UUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14245 0.67 0.99859
Target:  5'- uGCCuauauaGCCAUCAcGCuu-GAAUGccaAGCGCCa -3'
miRNA:   3'- -CGG------UGGUAGU-CGcuuCUUAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14286 0.68 0.997064
Target:  5'- cCCGCCG-CGGCGAAauGgcGugGCCg -3'
miRNA:   3'- cGGUGGUaGUCGCUUcuUauUugCGG- -5'
6682 5' -47.6 NC_001847.1 + 14323 0.66 0.999382
Target:  5'- cGCUGCUcgCGGUGggGccgggcguGGUGgcGGCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuuC--------UUAU--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14369 0.7 0.986911
Target:  5'- cGCCGCCAgcgcgCGGuCGuAGAGgcu-CGCCg -3'
miRNA:   3'- -CGGUGGUa----GUC-GCuUCUUauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14539 0.69 0.994368
Target:  5'- cGCUGCCcgCGGUGccGccGUAGAUGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCu-UAUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.