miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 131665 0.68 0.997788
Target:  5'- uGCCGCCgGUCGGgGAcgccauggccgcgcAGAacgcgcuGUGGGCGCUg -3'
miRNA:   3'- -CGGUGG-UAGUCgCU--------------UCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 130847 0.8 0.670488
Target:  5'- cGCCGCCAUCgaagccgaGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGGUAG--------UCGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 130738 0.84 0.448992
Target:  5'- uGCCGCCGUCGGCGucGAcgGcggcgaccguGGCGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUuaU----------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 130632 0.73 0.942971
Target:  5'- cGCCgagGCCGaagacgcggagaUCGGCGAGGAcgccGGCGCCa -3'
miRNA:   3'- -CGG---UGGU------------AGUCGCUUCUuau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 130580 0.68 0.997943
Target:  5'- -aCGCgGagagCAGCGAGGAcgAcGGCGCCg -3'
miRNA:   3'- cgGUGgUa---GUCGCUUCUuaU-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 130130 0.68 0.995894
Target:  5'- cGCC-CUcgCGcGCGAGGGcgAGGCGCa -3'
miRNA:   3'- -CGGuGGuaGU-CGCUUCUuaUUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 129937 0.7 0.98757
Target:  5'- gGCCGCCG-CGGCGAgAGAGccGgcgagggcuucucccGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU-UCUUauU---------------UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 129612 0.78 0.744851
Target:  5'- cGCCGCCGgu-GCGAGGAAggaggAGACgGCCa -3'
miRNA:   3'- -CGGUGGUaguCGCUUCUUa----UUUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 129612 0.67 0.998842
Target:  5'- gGCCGCCGUCA-CGAGcgu----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUcGCUUcuuauuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 129006 0.73 0.941015
Target:  5'- cGCCACCGagccccccgauggCGGCGAGGcgcucGCGCCg -3'
miRNA:   3'- -CGGUGGUa------------GUCGCUUCuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 127772 0.67 0.998292
Target:  5'- uCCACUGUCAGCG--------GCGCCg -3'
miRNA:   3'- cGGUGGUAGUCGCuucuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 127301 0.69 0.994014
Target:  5'- cGCCACCggCGGUGccGGAgacacggcgaccGGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCUUau----------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126654 0.67 0.998292
Target:  5'- uGCCACguUCGcccccaaacGCGAcGAG--GACGCCg -3'
miRNA:   3'- -CGGUGguAGU---------CGCUuCUUauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126595 0.68 0.997943
Target:  5'- aUCGCCGUCGaCGAcGAcgcAAACGCCg -3'
miRNA:   3'- cGGUGGUAGUcGCUuCUua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126426 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 124771 0.69 0.994368
Target:  5'- cGCCGCgAgCGGCGAcccgagcagGGAGUcaucGAACGCUu -3'
miRNA:   3'- -CGGUGgUaGUCGCU---------UCUUA----UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 124733 0.66 0.999607
Target:  5'- gGCCGCgGgcgaGGCGGAGAGaGGACcGCg -3'
miRNA:   3'- -CGGUGgUag--UCGCUUCUUaUUUG-CGg -5'
6682 5' -47.6 NC_001847.1 + 124645 0.7 0.986911
Target:  5'- cGUCGCCGUCcgaGGCGGAGAAcgaGGACaGCg -3'
miRNA:   3'- -CGGUGGUAG---UCGCUUCUUa--UUUG-CGg -5'
6682 5' -47.6 NC_001847.1 + 124557 0.68 0.997943
Target:  5'- cGCCgGCCcgCGcgcGCGggGGGgccgccGGCGCCg -3'
miRNA:   3'- -CGG-UGGuaGU---CGCuuCUUau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 124313 0.68 0.995894
Target:  5'- cGCCGCCGUCGcGCGcAGGugcugcagcAGCGCg -3'
miRNA:   3'- -CGGUGGUAGU-CGCuUCUuau------UUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.