miRNA display CGI


Results 21 - 40 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 35862 0.66 0.999674
Target:  5'- cGCCACCucgacgcgcugCGGCGGcagcuGGAGUcgGCGgCg -3'
miRNA:   3'- -CGGUGGua---------GUCGCU-----UCUUAuuUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 608 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67693 0.66 0.999658
Target:  5'- gGCauaGCUcUCGGCGAGGugcucgagcGCGCCg -3'
miRNA:   3'- -CGg--UGGuAGUCGCUUCuuauu----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 58063 0.66 0.999642
Target:  5'- gGCCGCCgAUUGGCGcgcgcgc-GCGCCg -3'
miRNA:   3'- -CGGUGG-UAGUCGCuucuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 133425 0.66 0.999607
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 89594 0.66 0.999607
Target:  5'- cGCCGCCG-CGGUGAAcgcgcuGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 49176 0.66 0.999607
Target:  5'- uGCCgACCAUggacgCGGCGGccaAGAcgGUAGcccucGCGCCg -3'
miRNA:   3'- -CGG-UGGUA-----GUCGCU---UCU--UAUU-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 84770 0.66 0.999607
Target:  5'- gGCCACgGcCAGC-AGGGc--GACGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGcUUCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 20470 0.66 0.999607
Target:  5'- gGCCGCggcggcugucgaCGUUGGCGAGGAA--GACGgCu -3'
miRNA:   3'- -CGGUG------------GUAGUCGCUUCUUauUUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 59283 0.66 0.999607
Target:  5'- aGCC-CCggCGGCGGgaaaccguacccAGggUGccagggcgcGGCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCU------------UCuuAU---------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 63752 0.66 0.999607
Target:  5'- cGCCGCCuggCGGCGcGGGccAGGC-CCg -3'
miRNA:   3'- -CGGUGGua-GUCGCuUCUuaUUUGcGG- -5'
6682 5' -47.6 NC_001847.1 + 5645 0.66 0.999607
Target:  5'- cGCCAaagagcCCGUcCAGCGGA---UGcGCGCCg -3'
miRNA:   3'- -CGGU------GGUA-GUCGCUUcuuAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 131904 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 93093 0.66 0.999607
Target:  5'- cGCgCGCCcgCaaAGCGggGcgggcuAUAAagGCGCCg -3'
miRNA:   3'- -CG-GUGGuaG--UCGCuuCu-----UAUU--UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 97951 0.66 0.999607
Target:  5'- cGUgACag-CGGCGAGGggUGGcuguACGUCa -3'
miRNA:   3'- -CGgUGguaGUCGCUUCuuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 85915 0.66 0.999607
Target:  5'- cCCGCCGUUuGCGuGGAGcaccaaucaGGACGCCc -3'
miRNA:   3'- cGGUGGUAGuCGCuUCUUa--------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 39081 0.66 0.999607
Target:  5'- cGCCGCCGgcucCAGaUGggGccauggGAGCGCUu -3'
miRNA:   3'- -CGGUGGUa---GUC-GCuuCuua---UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 90775 0.66 0.999607
Target:  5'- cGCCugCG-CGGCGAGGGGcccguucAGCaGCCc -3'
miRNA:   3'- -CGGugGUaGUCGCUUCUUau-----UUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 124733 0.66 0.999607
Target:  5'- gGCCGCgGgcgaGGCGGAGAGaGGACcGCg -3'
miRNA:   3'- -CGGUGgUag--UCGCUUCUUaUUUG-CGg -5'
6682 5' -47.6 NC_001847.1 + 67206 0.66 0.999607
Target:  5'- cGCCguGCCGagCGGCGGGcgcgcGGucGAACGCCg -3'
miRNA:   3'- -CGG--UGGUa-GUCGCUU-----CUuaUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.