miRNA display CGI


Results 41 - 60 of 579 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 124733 0.66 0.999607
Target:  5'- gGCCGCgGgcgaGGCGGAGAGaGGACcGCg -3'
miRNA:   3'- -CGGUGgUag--UCGCUUCUUaUUUG-CGg -5'
6682 5' -47.6 NC_001847.1 + 20470 0.66 0.999607
Target:  5'- gGCCGCggcggcugucgaCGUUGGCGAGGAA--GACGgCu -3'
miRNA:   3'- -CGGUG------------GUAGUCGCUUCUUauUUGCgG- -5'
6682 5' -47.6 NC_001847.1 + 85915 0.66 0.999607
Target:  5'- cCCGCCGUUuGCGuGGAGcaccaaucaGGACGCCc -3'
miRNA:   3'- cGGUGGUAGuCGCuUCUUa--------UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 39081 0.66 0.999607
Target:  5'- cGCCGCCGgcucCAGaUGggGccauggGAGCGCUu -3'
miRNA:   3'- -CGGUGGUa---GUC-GCuuCuua---UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 97951 0.66 0.999607
Target:  5'- cGUgACag-CGGCGAGGggUGGcuguACGUCa -3'
miRNA:   3'- -CGgUGguaGUCGCUUCuuAUU----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 90775 0.66 0.999607
Target:  5'- cGCCugCG-CGGCGAGGGGcccguucAGCaGCCc -3'
miRNA:   3'- -CGGugGUaGUCGCUUCUUau-----UUG-CGG- -5'
6682 5' -47.6 NC_001847.1 + 131904 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 74695 0.66 0.999597
Target:  5'- cGCCcgACgGgggCAGCGccGAcgcgcgcGUGGACGCCg -3'
miRNA:   3'- -CGG--UGgUa--GUCGCuuCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 126426 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 23613 0.66 0.999588
Target:  5'- gGCUggGCC-UCGGUGAAGGuucugcaguGCGCCc -3'
miRNA:   3'- -CGG--UGGuAGUCGCUUCUuauu-----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48784 0.66 0.999569
Target:  5'- cGCCGCCucGUCuGCGGGcgccucgccGGCGCCa -3'
miRNA:   3'- -CGGUGG--UAGuCGCUUcuuau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 48575 0.66 0.999548
Target:  5'- cGCCGCCGUCuucggcgccguccucGGCGucccccuUAAgccGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCuucuu--AUU---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 99470 0.66 0.999548
Target:  5'- cGCCGCUcggggccaagAUCAGCGcgauccgcggaaauuAgccuGGAGUuuGCGCCg -3'
miRNA:   3'- -CGGUGG----------UAGUCGC---------------U----UCUUAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 110342 0.66 0.999505
Target:  5'- cCCACC-UCGaaggccGCGAGGGcguuguGUGGACGCUc -3'
miRNA:   3'- cGGUGGuAGU------CGCUUCU------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 94183 0.66 0.999505
Target:  5'- gGCCGCC-UCGcGCGGgcAGuucgAGGCGCUg -3'
miRNA:   3'- -CGGUGGuAGU-CGCU--UCuua-UUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 71215 0.66 0.999505
Target:  5'- cGCgGCCGcgcUgGGUGAuGGAGUGugccauGACGCCg -3'
miRNA:   3'- -CGgUGGU---AgUCGCU-UCUUAU------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 75627 0.66 0.999505
Target:  5'- uGCCGCCccacgaCGGCGAugccGGAGccggAGGCGCg -3'
miRNA:   3'- -CGGUGGua----GUCGCU----UCUUa---UUUGCGg -5'
6682 5' -47.6 NC_001847.1 + 74281 0.66 0.999505
Target:  5'- gGCCGCCcUC-GCGcuGGAcgcccuGGCGCCg -3'
miRNA:   3'- -CGGUGGuAGuCGCuuCUUau----UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 87564 0.66 0.999505
Target:  5'- cGCCACUAcgccUCgGGCGAGGugcccGUGcucaccgaggccGGCGCCg -3'
miRNA:   3'- -CGGUGGU----AG-UCGCUUCu----UAU------------UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 46215 0.66 0.999505
Target:  5'- cGCCGCCGggccggCcGCGggGAAaucuCGCa -3'
miRNA:   3'- -CGGUGGUa-----GuCGCuuCUUauuuGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.