miRNA display CGI


Results 41 - 60 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 75640 0.76 0.084698
Target:  5'- aGCCGGUGCGG-CCUCGGC-GCACCc -3'
miRNA:   3'- gCGGUCGCGCCuGGGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 116403 0.76 0.086844
Target:  5'- gCGgCGGCGCucuGGGCCCCgGGCCGCGCg- -3'
miRNA:   3'- -GCgGUCGCG---CCUGGGG-CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 79683 0.76 0.086844
Target:  5'- gGCUAGCGCGGcgcgcGCCCC-GCCgGCGCCAg -3'
miRNA:   3'- gCGGUCGCGCC-----UGGGGcCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27486 0.76 0.089041
Target:  5'- aCGCCGGCuucgGCGGcagagGCCUCGGCCGcCGCCGc -3'
miRNA:   3'- -GCGGUCG----CGCC-----UGGGGCCGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 69318 0.76 0.089041
Target:  5'- uGCCuuuugGGCGCGGGCCUCGGgCGCugCu -3'
miRNA:   3'- gCGG-----UCGCGCCUGGGGCCgGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 103129 0.76 0.089041
Target:  5'- gCGCgAGCGCGGGCCgCCGG-CGCGCgAa -3'
miRNA:   3'- -GCGgUCGCGCCUGG-GGCCgGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 12306 0.76 0.09129
Target:  5'- aGCCagGGCGCGGGCCCggUGGgCGCGCCc -3'
miRNA:   3'- gCGG--UCGCGCCUGGG--GCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 105761 0.76 0.09129
Target:  5'- gGCCucgcGCGCGGcaGCUCCGGCCGC-CCGc -3'
miRNA:   3'- gCGGu---CGCGCC--UGGGGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 24566 0.76 0.09129
Target:  5'- cCGUUAGCGCGu-CCCCGGCCGUGuCCAu -3'
miRNA:   3'- -GCGGUCGCGCcuGGGGCCGGCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 122019 0.76 0.093594
Target:  5'- aGgCGGCGCGGcgccgcccgcgcGCCCCGGCCGCGaCAa -3'
miRNA:   3'- gCgGUCGCGCC------------UGGGGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 43127 0.76 0.093594
Target:  5'- cCGCagaCGGCGCGGGCCCgCGGgCGCugCGc -3'
miRNA:   3'- -GCG---GUCGCGCCUGGG-GCCgGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 118492 0.76 0.093594
Target:  5'- gCGCCuguaGGCGCgGGGCCCCGacggcaaagccGCCGCGCCc -3'
miRNA:   3'- -GCGG----UCGCG-CCUGGGGC-----------CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 21768 0.76 0.095952
Target:  5'- cCGCCGGCGcCGGGCCcggcgCCGGCCGgGCgCGg -3'
miRNA:   3'- -GCGGUCGC-GCCUGG-----GGCCGGCgUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 124581 0.76 0.095952
Target:  5'- cCGCCGGCGcCGGGCCcggcgCCGGCCGgGCgCGg -3'
miRNA:   3'- -GCGGUCGC-GCCUGG-----GGCCGGCgUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 84767 0.76 0.095952
Target:  5'- aGCCGGCgGCGGcGCCguccuuagcgUCGGCCGCGCCGc -3'
miRNA:   3'- gCGGUCG-CGCC-UGG----------GGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18970 0.76 0.098123
Target:  5'- aCGaCCAGCGCGGccgcggcGCCCgCGGCCGCcagcGCCu -3'
miRNA:   3'- -GC-GGUCGCGCC-------UGGG-GCCGGCG----UGGu -5'
6683 3' -66.4 NC_001847.1 + 80768 0.76 0.098367
Target:  5'- gCGCCGGCGCGGACcgggacgaCCCGGCCuuuauacaCGCCu -3'
miRNA:   3'- -GCGGUCGCGCCUG--------GGGCCGGc-------GUGGu -5'
6683 3' -66.4 NC_001847.1 + 102134 0.75 0.100839
Target:  5'- uCGCCccGCGCGccCCCCGGCCGCuCCGg -3'
miRNA:   3'- -GCGGu-CGCGCcuGGGGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 1979 0.75 0.10235
Target:  5'- cCGCCAGCGCcu-CCCCGGCagcgggucguagaGCACCAc -3'
miRNA:   3'- -GCGGUCGCGccuGGGGCCGg------------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 101489 0.75 0.10337
Target:  5'- gCGCUAGCGacCGaGGCgCCGGCUGCACCGc -3'
miRNA:   3'- -GCGGUCGC--GC-CUGgGGCCGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.