miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 66415 0.66 0.917204
Target:  5'- cGCGGCGCgGGCUgAcGUaCAcCCUCCa -3'
miRNA:   3'- uCGUCGCG-CUGAgUuCAgGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 53108 0.66 0.917204
Target:  5'- cGGCGGCccgccaGCGGCUgcuugCCAUCCUCg -3'
miRNA:   3'- -UCGUCG------CGCUGAguucaGGUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 114165 0.66 0.911246
Target:  5'- cAGCGGCGCGcGCUCAcuGGg-CGcUCgCUCCa -3'
miRNA:   3'- -UCGUCGCGC-UGAGU--UCagGU-AG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 82634 0.66 0.905045
Target:  5'- gGGCcGCGCGGCcgCGcGcUCCGUCagCUCCa -3'
miRNA:   3'- -UCGuCGCGCUGa-GUuC-AGGUAG--GAGG- -5'
6683 5' -54.9 NC_001847.1 + 102156 0.66 0.905045
Target:  5'- cGGCGGCGCGGCccgccgCAAGcUCAgCCgCCa -3'
miRNA:   3'- -UCGUCGCGCUGa-----GUUCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 2374 0.66 0.905045
Target:  5'- cGGCGGCgGCGGCUUuucgCCGgcgCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGAGuucaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 1164 0.66 0.905045
Target:  5'- cGGCAGCGCGGCcgcgCAgaAGgCCA-CCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGa---GU--UCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 104537 0.66 0.905045
Target:  5'- cGCuGCGCGGCggcccCGGGgCCgcuacgcggcgGUCCUCCu -3'
miRNA:   3'- uCGuCGCGCUGa----GUUCaGG-----------UAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 13712 0.66 0.905045
Target:  5'- cGGCGGCGguCGggccGCUCAacGGcUCCGcCCUCCa -3'
miRNA:   3'- -UCGUCGC--GC----UGAGU--UC-AGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105187 0.66 0.905045
Target:  5'- cGGCGGCgGCGGCUUuucgCCGgcgCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGAGuucaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 103977 0.66 0.905045
Target:  5'- cGGCAGCGCGGCcgcgCAgaAGgCCA-CCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGa---GU--UCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 53867 0.66 0.902496
Target:  5'- uGGCGGCGcCGACcgccgCGGGggcggcgggccccCCGUCCUCg -3'
miRNA:   3'- -UCGUCGC-GCUGa----GUUCa------------GGUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 104798 0.67 0.898601
Target:  5'- cAGCAacGCGCGguGCUCGucGUCCAgCCcgCCg -3'
miRNA:   3'- -UCGU--CGCGC--UGAGUu-CAGGUaGGa-GG- -5'
6683 5' -54.9 NC_001847.1 + 109753 0.67 0.898601
Target:  5'- gGGCGGgGCGA-UCGAGUCUaugggccaGUCUUCg -3'
miRNA:   3'- -UCGUCgCGCUgAGUUCAGG--------UAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 129204 0.67 0.898601
Target:  5'- aAGCAGCG-GGCg--GGcCCGUCgUCCg -3'
miRNA:   3'- -UCGUCGCgCUGaguUCaGGUAGgAGG- -5'
6683 5' -54.9 NC_001847.1 + 133817 0.67 0.898601
Target:  5'- cGCGGCGCuggGGCUCGGGgagCCGgaCUUCg -3'
miRNA:   3'- uCGUCGCG---CUGAGUUCa--GGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 9528 0.67 0.898601
Target:  5'- gGGCGGCGCG-CUagcGUCCGUgCgugcgCCa -3'
miRNA:   3'- -UCGUCGCGCuGAguuCAGGUAgGa----GG- -5'
6683 5' -54.9 NC_001847.1 + 78090 0.67 0.898601
Target:  5'- gGGCGGCGgccgGGCUCGA-UCCG-CCUCUu -3'
miRNA:   3'- -UCGUCGCg---CUGAGUUcAGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 126079 0.67 0.898601
Target:  5'- uAGCAGCcuGCG-CUCcaaAAGUCCAUugcccCCUCg -3'
miRNA:   3'- -UCGUCG--CGCuGAG---UUCAGGUA-----GGAGg -5'
6683 5' -54.9 NC_001847.1 + 31004 0.67 0.898601
Target:  5'- cGCGGCGCuggGGCUCGGGgagCCGgaCUUCg -3'
miRNA:   3'- uCGUCGCG---CUGAGUUCa--GGUagGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.