miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 128551 0.71 0.676479
Target:  5'- cAGCGGUGCGACUCccuUCUgguUCCUCUc -3'
miRNA:   3'- -UCGUCGCGCUGAGuucAGGu--AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 120113 0.71 0.683698
Target:  5'- cGCGcGUcgGCGACUCAAG-CCAuugccgcgaccuugUCCUCCg -3'
miRNA:   3'- uCGU-CG--CGCUGAGUUCaGGU--------------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 54125 0.7 0.716374
Target:  5'- cGGCGGCGuCGcccaugcGCUCcuccuGGUCCAgcagcgcgUCCUCCg -3'
miRNA:   3'- -UCGUCGC-GC-------UGAGu----UCAGGU--------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 124011 0.7 0.717384
Target:  5'- cGCAGCuccgccGCGuC-CAAGaagCCGUCCUCCa -3'
miRNA:   3'- uCGUCG------CGCuGaGUUCa--GGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 96548 0.7 0.737423
Target:  5'- aGGCGacGCGCGcGCUCAAcgCCAggagCCUCCg -3'
miRNA:   3'- -UCGU--CGCGC-UGAGUUcaGGUa---GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 48537 0.7 0.744351
Target:  5'- cGCGGCGCGGCcagCAgcaauggcccgcaaAGUCCAggaugucgugcUCCUCg -3'
miRNA:   3'- uCGUCGCGCUGa--GU--------------UCAGGU-----------AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 95372 0.7 0.746321
Target:  5'- aGGCGGCGCaacauacaugcccGACgcuccaAAGUCagCAUCCUCCu -3'
miRNA:   3'- -UCGUCGCG-------------CUGag----UUCAG--GUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 53985 0.7 0.747305
Target:  5'- gAGCGGCGCGGCgggCcAGUCgucgcuuaacaCGUCCggUCCg -3'
miRNA:   3'- -UCGUCGCGCUGa--GuUCAG-----------GUAGG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 33089 0.7 0.747305
Target:  5'- cGCGGCGCGcaguacagcGCUCGcG-CCAUCCUggCCg -3'
miRNA:   3'- uCGUCGCGC---------UGAGUuCaGGUAGGA--GG- -5'
6683 5' -54.9 NC_001847.1 + 29539 0.7 0.747305
Target:  5'- cGCGGCGCGggcGCUCGAGUUC--CC-CCg -3'
miRNA:   3'- uCGUCGCGC---UGAGUUCAGGuaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 73241 0.7 0.757082
Target:  5'- cGGCGGCGCGggcgcGCUCGAGgCCGUgCgcgcacgCCg -3'
miRNA:   3'- -UCGUCGCGC-----UGAGUUCaGGUAgGa------GG- -5'
6683 5' -54.9 NC_001847.1 + 125171 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 22358 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 46534 0.69 0.766746
Target:  5'- gGGCGGCgGCGGCgcgcgCGAG---GUCCUCCa -3'
miRNA:   3'- -UCGUCG-CGCUGa----GUUCaggUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 34612 0.69 0.776286
Target:  5'- cGGCGGCGCGcCgaggAAGUCCGgcgCCUgCg -3'
miRNA:   3'- -UCGUCGCGCuGag--UUCAGGUa--GGAgG- -5'
6683 5' -54.9 NC_001847.1 + 101189 0.69 0.776286
Target:  5'- cGcCAGCGCG-CUCGGGuucUCCAgcgCCUCg -3'
miRNA:   3'- uC-GUCGCGCuGAGUUC---AGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 95831 0.69 0.776286
Target:  5'- -cCAGCGCGGCUUcguGUCCGUgCUgCa -3'
miRNA:   3'- ucGUCGCGCUGAGuu-CAGGUAgGAgG- -5'
6683 5' -54.9 NC_001847.1 + 56598 0.69 0.785693
Target:  5'- cGGCAGCGCcggGACUCG----CGUCUUCCg -3'
miRNA:   3'- -UCGUCGCG---CUGAGUucagGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105516 0.69 0.794957
Target:  5'- cGCGGCGCcccggccCUCAuGUCCuccaCCUCCa -3'
miRNA:   3'- uCGUCGCGcu-----GAGUuCAGGua--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 87160 0.69 0.794957
Target:  5'- uGGcCAGCGCGAgcgacagcCUCAa---CAUCCUCCa -3'
miRNA:   3'- -UC-GUCGCGCU--------GAGUucagGUAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.