miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 123287 1.12 0.001835
Target:  5'- uAGCAGCGCGACUCAAGUCCAUCCUCCg -3'
miRNA:   3'- -UCGUCGCGCUGAGUUCAGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 5359 0.77 0.366492
Target:  5'- cGCGGCGCGGC-CGGGcCCAggCUCCg -3'
miRNA:   3'- uCGUCGCGCUGaGUUCaGGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 100442 0.77 0.381417
Target:  5'- -cCAGCGCGGCgcgCAAGUCCucgcgccagcgcUCCUCCu -3'
miRNA:   3'- ucGUCGCGCUGa--GUUCAGGu-----------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 132963 0.75 0.47321
Target:  5'- cGCGGCGCGGCUCGcGGaCCAcccgcUCUUCCc -3'
miRNA:   3'- uCGUCGCGCUGAGU-UCaGGU-----AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 30150 0.75 0.47321
Target:  5'- cGCGGCGCGGCUCGcGGaCCAcccgcUCUUCCc -3'
miRNA:   3'- uCGUCGCGCUGAGU-UCaGGU-----AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 3156 0.74 0.512141
Target:  5'- cGGCGGCGCGGCg--GG-CCG-CCUCCa -3'
miRNA:   3'- -UCGUCGCGCUGaguUCaGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105969 0.74 0.512141
Target:  5'- cGGCGGCGCGGCg--GG-CCG-CCUCCa -3'
miRNA:   3'- -UCGUCGCGCUGaguUCaGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 87124 0.73 0.579993
Target:  5'- cAGC-GCGCGGCUCGGGggCUAccucugcgacaacuUCCUCCc -3'
miRNA:   3'- -UCGuCGCGCUGAGUUCa-GGU--------------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 124481 0.73 0.583086
Target:  5'- cGCGuGCGCG-UUCAAGUCCAagCgCUCCg -3'
miRNA:   3'- uCGU-CGCGCuGAGUUCAGGUa-G-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 58118 0.73 0.59342
Target:  5'- uGCGGCGCGGCggaUGAGcgCCAggaCCUCCu -3'
miRNA:   3'- uCGUCGCGCUGa--GUUCa-GGUa--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 27932 0.73 0.59342
Target:  5'- gGGCGGC-CGuCUCGAGUUCcUCCUCg -3'
miRNA:   3'- -UCGUCGcGCuGAGUUCAGGuAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 88510 0.72 0.603782
Target:  5'- cGGCGGCuGCGACgcCAAGUUCGcCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGa-GUUCAGGUaGGAGg -5'
6683 5' -54.9 NC_001847.1 + 92230 0.72 0.603782
Target:  5'- cAGCAGCGCGcgcuCUCGAG-CCG-CCUgCa -3'
miRNA:   3'- -UCGUCGCGCu---GAGUUCaGGUaGGAgG- -5'
6683 5' -54.9 NC_001847.1 + 61946 0.72 0.621445
Target:  5'- cGGCGGCGCGGCccgcgCGGGccgacUCCGccgccgcguccgccUCCUCCg -3'
miRNA:   3'- -UCGUCGCGCUGa----GUUC-----AGGU--------------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 19278 0.72 0.624565
Target:  5'- cGGCGGCGCGAcCUCcGGUCCcUCgUUg -3'
miRNA:   3'- -UCGUCGCGCU-GAGuUCAGGuAGgAGg -5'
6683 5' -54.9 NC_001847.1 + 66118 0.72 0.63497
Target:  5'- cGaCAGCGCGACgcaccgCAgcAGcUCAUCCUCCu -3'
miRNA:   3'- uC-GUCGCGCUGa-----GU--UCaGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 85882 0.72 0.645372
Target:  5'- gAGCAGCGCGAgCUUgucgAGGUCCAggCgagCCg -3'
miRNA:   3'- -UCGUCGCGCU-GAG----UUCAGGUagGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 67523 0.71 0.655764
Target:  5'- cGCGGaCGCGGC-CAAcgaCAUCCUCCg -3'
miRNA:   3'- uCGUC-GCGCUGaGUUcagGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 80857 0.71 0.666135
Target:  5'- cGGCGGCGCGcgUCGAGgCCGUCCg-- -3'
miRNA:   3'- -UCGUCGCGCugAGUUCaGGUAGGagg -5'
6683 5' -54.9 NC_001847.1 + 54697 0.71 0.675446
Target:  5'- cGGCGGCGCccgcggggaggacGACgcgCGGGUCCccuUCCUCg -3'
miRNA:   3'- -UCGUCGCG-------------CUGa--GUUCAGGu--AGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.