miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 2655 0.69 0.813019
Target:  5'- uGCGGCgccuucgcccgGCGGCUCGgccggcaucGGcUCGUCCUCCg -3'
miRNA:   3'- uCGUCG-----------CGCUGAGU---------UCaGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 33089 0.7 0.747305
Target:  5'- cGCGGCGCGcaguacagcGCUCGcG-CCAUCCUggCCg -3'
miRNA:   3'- uCGUCGCGC---------UGAGUuCaGGUAGGA--GG- -5'
6683 5' -54.9 NC_001847.1 + 125171 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 34612 0.69 0.776286
Target:  5'- cGGCGGCGCGcCgaggAAGUCCGgcgCCUgCg -3'
miRNA:   3'- -UCGUCGCGCuGag--UUCAGGUa--GGAgG- -5'
6683 5' -54.9 NC_001847.1 + 95831 0.69 0.776286
Target:  5'- -cCAGCGCGGCUUcguGUCCGUgCUgCa -3'
miRNA:   3'- ucGUCGCGCUGAGuu-CAGGUAgGAgG- -5'
6683 5' -54.9 NC_001847.1 + 87160 0.69 0.794957
Target:  5'- uGGcCAGCGCGAgcgacagcCUCAa---CAUCCUCCa -3'
miRNA:   3'- -UC-GUCGCGCU--------GAGUucagGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105516 0.69 0.794957
Target:  5'- cGCGGCGCcccggccCUCAuGUCCuccaCCUCCa -3'
miRNA:   3'- uCGUCGCGcu-----GAGUuCAGGua--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 52162 0.69 0.804068
Target:  5'- cGGCAGCGCGGg-CAAcaaUCgCGUCUUCCa -3'
miRNA:   3'- -UCGUCGCGCUgaGUUc--AG-GUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 3993 0.69 0.813019
Target:  5'- cGcCAGCGCGGC-CAAGUUaacaGUCCgCCc -3'
miRNA:   3'- uC-GUCGCGCUGaGUUCAGg---UAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 29539 0.7 0.747305
Target:  5'- cGCGGCGCGggcGCUCGAGUUC--CC-CCg -3'
miRNA:   3'- uCGUCGCGC---UGAGUUCAGGuaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 48537 0.7 0.744351
Target:  5'- cGCGGCGCGGCcagCAgcaauggcccgcaaAGUCCAggaugucgugcUCCUCg -3'
miRNA:   3'- uCGUCGCGCUGa--GU--------------UCAGGU-----------AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 120113 0.71 0.683698
Target:  5'- cGCGcGUcgGCGACUCAAG-CCAuugccgcgaccuugUCCUCCg -3'
miRNA:   3'- uCGU-CG--CGCUGAGUUCaGGU--------------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 5359 0.77 0.366492
Target:  5'- cGCGGCGCGGC-CGGGcCCAggCUCCg -3'
miRNA:   3'- uCGUCGCGCUGaGUUCaGGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 132963 0.75 0.47321
Target:  5'- cGCGGCGCGGCUCGcGGaCCAcccgcUCUUCCc -3'
miRNA:   3'- uCGUCGCGCUGAGU-UCaGGU-----AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105969 0.74 0.512141
Target:  5'- cGGCGGCGCGGCg--GG-CCG-CCUCCa -3'
miRNA:   3'- -UCGUCGCGCUGaguUCaGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 27932 0.73 0.59342
Target:  5'- gGGCGGC-CGuCUCGAGUUCcUCCUCg -3'
miRNA:   3'- -UCGUCGcGCuGAGUUCAGGuAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 92230 0.72 0.603782
Target:  5'- cAGCAGCGCGcgcuCUCGAG-CCG-CCUgCa -3'
miRNA:   3'- -UCGUCGCGCu---GAGUUCaGGUaGGAgG- -5'
6683 5' -54.9 NC_001847.1 + 88510 0.72 0.603782
Target:  5'- cGGCGGCuGCGACgcCAAGUUCGcCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGa-GUUCAGGUaGGAGg -5'
6683 5' -54.9 NC_001847.1 + 61946 0.72 0.621445
Target:  5'- cGGCGGCGCGGCccgcgCGGGccgacUCCGccgccgcguccgccUCCUCCg -3'
miRNA:   3'- -UCGUCGCGCUGa----GUUC-----AGGU--------------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 80857 0.71 0.666135
Target:  5'- cGGCGGCGCGcgUCGAGgCCGUCCg-- -3'
miRNA:   3'- -UCGUCGCGCugAGUUCaGGUAGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.