miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 102156 0.66 0.905045
Target:  5'- cGGCGGCGCGGCccgccgCAAGcUCAgCCgCCa -3'
miRNA:   3'- -UCGUCGCGCUGa-----GUUCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 89611 0.66 0.928379
Target:  5'- cGCuGCGCGGCaCGGccCCGUCCgcgCCg -3'
miRNA:   3'- uCGuCGCGCUGaGUUcaGGUAGGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 63395 0.66 0.928379
Target:  5'- cGCAGCGCGug-CAAGugcUCCAgcaggUCCUUg -3'
miRNA:   3'- uCGUCGCGCugaGUUC---AGGU-----AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 119622 0.66 0.917204
Target:  5'- cAGCAGCccGCGGCUCccgccGAGcCgCAUCgaCUCCa -3'
miRNA:   3'- -UCGUCG--CGCUGAG-----UUCaG-GUAG--GAGG- -5'
6683 5' -54.9 NC_001847.1 + 97888 0.66 0.917204
Target:  5'- cGGCGGCGCGGauggCGAacagcgcgCCGUCCgCCg -3'
miRNA:   3'- -UCGUCGCGCUga--GUUca------GGUAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 5354 0.66 0.928379
Target:  5'- uAGcCGGcCGCGGCUgGAuGUCUGUCuCUCUg -3'
miRNA:   3'- -UC-GUC-GCGCUGAgUU-CAGGUAG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 20088 0.66 0.922915
Target:  5'- cGCGGCGCGGC-CcGG-CCAUCgCUagcCCg -3'
miRNA:   3'- uCGUCGCGCUGaGuUCaGGUAG-GA---GG- -5'
6683 5' -54.9 NC_001847.1 + 1817 0.66 0.922915
Target:  5'- cGCcgAGCGCG-CUCAcGUCCGgcgcgCCcgUCCa -3'
miRNA:   3'- uCG--UCGCGCuGAGUuCAGGUa----GG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 104537 0.66 0.905045
Target:  5'- cGCuGCGCGGCggcccCGGGgCCgcuacgcggcgGUCCUCCu -3'
miRNA:   3'- uCGuCGCGCUGa----GUUCaGG-----------UAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 1164 0.66 0.905045
Target:  5'- cGGCAGCGCGGCcgcgCAgaAGgCCA-CCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGa---GU--UCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 100442 0.77 0.381417
Target:  5'- -cCAGCGCGGCgcgCAAGUCCucgcgccagcgcUCCUCCu -3'
miRNA:   3'- ucGUCGCGCUGa--GUUCAGGu-----------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 18495 0.66 0.928379
Target:  5'- cGUAGCGCGcgcgcgccagcaGCUCuggcGAGUUCGU-CUCCa -3'
miRNA:   3'- uCGUCGCGC------------UGAG----UUCAGGUAgGAGG- -5'
6683 5' -54.9 NC_001847.1 + 80907 0.66 0.928379
Target:  5'- cGCAGCGCuGCcCAcgagcagacAGUCCAcgCCgUCCa -3'
miRNA:   3'- uCGUCGCGcUGaGU---------UCAGGUa-GG-AGG- -5'
6683 5' -54.9 NC_001847.1 + 59224 0.66 0.917204
Target:  5'- cGGCGGCGCcaccgcguGCUCGuGUUaCGUCCUCa -3'
miRNA:   3'- -UCGUCGCGc-------UGAGUuCAG-GUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 82634 0.66 0.905045
Target:  5'- gGGCcGCGCGGCcgCGcGcUCCGUCagCUCCa -3'
miRNA:   3'- -UCGuCGCGCUGa-GUuC-AGGUAG--GAGG- -5'
6683 5' -54.9 NC_001847.1 + 15348 0.66 0.922915
Target:  5'- gGGguGCGUGAUggcuUCGAGgcucggCCAgCCUUCg -3'
miRNA:   3'- -UCguCGCGCUG----AGUUCa-----GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 2374 0.66 0.905045
Target:  5'- cGGCGGCgGCGGCUUuucgCCGgcgCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGAGuucaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 109753 0.67 0.898601
Target:  5'- gGGCGGgGCGA-UCGAGUCUaugggccaGUCUUCg -3'
miRNA:   3'- -UCGUCgCGCUgAGUUCAGG--------UAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 37347 0.66 0.922915
Target:  5'- uGCGGUcauGCGGCgggUCGAGcCgGUCCUCUc -3'
miRNA:   3'- uCGUCG---CGCUG---AGUUCaGgUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 62906 0.66 0.917204
Target:  5'- gGGUGGCGCGgguGCUCGGGgcCCGcgggcggcUCCUCg -3'
miRNA:   3'- -UCGUCGCGC---UGAGUUCa-GGU--------AGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.