miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 1164 0.66 0.905045
Target:  5'- cGGCAGCGCGGCcgcgCAgaAGgCCA-CCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGa---GU--UCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 1286 0.67 0.87785
Target:  5'- uGGCGGCGCGGuggcuggccgcCUCGcccuccacgaAGUCCGgcUCC-CCg -3'
miRNA:   3'- -UCGUCGCGCU-----------GAGU----------UCAGGU--AGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 1817 0.66 0.922915
Target:  5'- cGCcgAGCGCG-CUCAcGUCCGgcgcgCCcgUCCa -3'
miRNA:   3'- uCG--UCGCGCuGAGUuCAGGUa----GG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 1928 0.68 0.838821
Target:  5'- cGCGGCGCGgcggccACUCGGG-CCgccggcgcucGUCCUCg -3'
miRNA:   3'- uCGUCGCGC------UGAGUUCaGG----------UAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 2374 0.66 0.905045
Target:  5'- cGGCGGCgGCGGCUUuucgCCGgcgCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGAGuucaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 2655 0.69 0.813019
Target:  5'- uGCGGCgccuucgcccgGCGGCUCGgccggcaucGGcUCGUCCUCCg -3'
miRNA:   3'- uCGUCG-----------CGCUGAGU---------UCaGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 2703 0.69 0.794957
Target:  5'- cGCGGCGCcccggccCUCAuGUCCuccaCCUCCa -3'
miRNA:   3'- uCGUCGCGcu-----GAGUuCAGGua--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 3156 0.74 0.512141
Target:  5'- cGGCGGCGCGGCg--GG-CCG-CCUCCa -3'
miRNA:   3'- -UCGUCGCGCUGaguUCaGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 3633 0.68 0.838821
Target:  5'- cGCGGCGCGcguacAC-CAGGUCCA-CCagcgCCg -3'
miRNA:   3'- uCGUCGCGC-----UGaGUUCAGGUaGGa---GG- -5'
6683 5' -54.9 NC_001847.1 + 3820 0.67 0.870474
Target:  5'- cGGCGGCGCGcuGC-CGGG-CCAcgCCUCg -3'
miRNA:   3'- -UCGUCGCGC--UGaGUUCaGGUa-GGAGg -5'
6683 5' -54.9 NC_001847.1 + 3993 0.69 0.813019
Target:  5'- cGcCAGCGCGGC-CAAGUUaacaGUCCgCCc -3'
miRNA:   3'- uC-GUCGCGCUGaGUUCAGg---UAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 4393 0.68 0.855064
Target:  5'- cGCGcCGCGGCcCAGgcgcuGUCCGcgUCCUCCg -3'
miRNA:   3'- uCGUcGCGCUGaGUU-----CAGGU--AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 5354 0.66 0.928379
Target:  5'- uAGcCGGcCGCGGCUgGAuGUCUGUCuCUCUg -3'
miRNA:   3'- -UC-GUC-GCGCUGAgUU-CAGGUAG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 5359 0.77 0.366492
Target:  5'- cGCGGCGCGGC-CGGGcCCAggCUCCg -3'
miRNA:   3'- uCGUCGCGCUGaGUUCaGGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 6758 0.68 0.847043
Target:  5'- uGCGGUGCGGCcggugCGAGgcgCCAgcUgCUCCg -3'
miRNA:   3'- uCGUCGCGCUGa----GUUCa--GGU--AgGAGG- -5'
6683 5' -54.9 NC_001847.1 + 9079 0.68 0.838821
Target:  5'- uGCAGC-CGGCUCGAcGagCA-CCUCCa -3'
miRNA:   3'- uCGUCGcGCUGAGUU-CagGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 9528 0.67 0.898601
Target:  5'- gGGCGGCGCG-CUagcGUCCGUgCgugcgCCa -3'
miRNA:   3'- -UCGUCGCGCuGAguuCAGGUAgGa----GG- -5'
6683 5' -54.9 NC_001847.1 + 9734 0.66 0.928379
Target:  5'- cGGCGGCGCcggGGCagUCGccgucGGUCCA-CCUCg -3'
miRNA:   3'- -UCGUCGCG---CUG--AGU-----UCAGGUaGGAGg -5'
6683 5' -54.9 NC_001847.1 + 12407 0.67 0.862876
Target:  5'- cAGCAguuucccccGCGCGAUUUGAGUgCGggCUCCa -3'
miRNA:   3'- -UCGU---------CGCGCUGAGUUCAgGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 13712 0.66 0.905045
Target:  5'- cGGCGGCGguCGggccGCUCAacGGcUCCGcCCUCCa -3'
miRNA:   3'- -UCGUCGC--GC----UGAGU--UC-AGGUaGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.