miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 78704 0.66 0.922915
Target:  5'- gGGCAGCacGCGAgUgCGGG-CgGUCUUCCg -3'
miRNA:   3'- -UCGUCG--CGCUgA-GUUCaGgUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 18495 0.66 0.928379
Target:  5'- cGUAGCGCGcgcgcgccagcaGCUCuggcGAGUUCGU-CUCCa -3'
miRNA:   3'- uCGUCGCGC------------UGAG----UUCAGGUAgGAGG- -5'
6683 5' -54.9 NC_001847.1 + 53108 0.66 0.917204
Target:  5'- cGGCGGCccgccaGCGGCUgcuugCCAUCCUCg -3'
miRNA:   3'- -UCGUCG------CGCUGAguucaGGUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 9734 0.66 0.928379
Target:  5'- cGGCGGCGCcggGGCagUCGccgucGGUCCA-CCUCg -3'
miRNA:   3'- -UCGUCGCG---CUG--AGU-----UCAGGUaGGAGg -5'
6683 5' -54.9 NC_001847.1 + 108167 0.66 0.928379
Target:  5'- uAGcCGGcCGCGGCUgGAuGUCUGUCuCUCUg -3'
miRNA:   3'- -UC-GUC-GCGCUGAgUU-CAGGUAG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 32267 0.66 0.922915
Target:  5'- cGCGuGCGUGGCUCGcG-CCGUCCg-- -3'
miRNA:   3'- uCGU-CGCGCUGAGUuCaGGUAGGagg -5'
6683 5' -54.9 NC_001847.1 + 5354 0.66 0.928379
Target:  5'- uAGcCGGcCGCGGCUgGAuGUCUGUCuCUCUg -3'
miRNA:   3'- -UC-GUC-GCGCUGAgUU-CAGGUAG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 89611 0.66 0.928379
Target:  5'- cGCuGCGCGGCaCGGccCCGUCCgcgCCg -3'
miRNA:   3'- uCGuCGCGCUGaGUUcaGGUAGGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 63395 0.66 0.928379
Target:  5'- cGCAGCGCGug-CAAGugcUCCAgcaggUCCUUg -3'
miRNA:   3'- uCGUCGCGCugaGUUC---AGGU-----AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 114165 0.66 0.911246
Target:  5'- cAGCGGCGCGcGCUCAcuGGg-CGcUCgCUCCa -3'
miRNA:   3'- -UCGUCGCGC-UGAGU--UCagGU-AG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 80907 0.66 0.928379
Target:  5'- cGCAGCGCuGCcCAcgagcagacAGUCCAcgCCgUCCa -3'
miRNA:   3'- uCGUCGCGcUGaGU---------UCAGGUa-GG-AGG- -5'
6683 5' -54.9 NC_001847.1 + 15348 0.66 0.922915
Target:  5'- gGGguGCGUGAUggcuUCGAGgcucggCCAgCCUUCg -3'
miRNA:   3'- -UCguCGCGCUG----AGUUCa-----GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 87014 0.66 0.917204
Target:  5'- cGGCGGCuggcccGCGACUUucucgGAGgucaCCAaCCUCCu -3'
miRNA:   3'- -UCGUCG------CGCUGAG-----UUCa---GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 53867 0.66 0.902496
Target:  5'- uGGCGGCGcCGACcgccgCGGGggcggcgggccccCCGUCCUCg -3'
miRNA:   3'- -UCGUCGC-GCUGa----GUUCa------------GGUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 104630 0.66 0.922915
Target:  5'- cGCcgAGCGCG-CUCAcGUCCGgcgcgCCcgUCCa -3'
miRNA:   3'- uCG--UCGCGCuGAGUuCAGGUa----GG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 31107 0.66 0.917204
Target:  5'- gGGCAGCGCGGuggCAugccuUCgGUCCUCg -3'
miRNA:   3'- -UCGUCGCGCUga-GUuc---AGgUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 105187 0.66 0.905045
Target:  5'- cGGCGGCgGCGGCUUuucgCCGgcgCCUCg -3'
miRNA:   3'- -UCGUCG-CGCUGAGuucaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 66415 0.66 0.917204
Target:  5'- cGCGGCGCgGGCUgAcGUaCAcCCUCCa -3'
miRNA:   3'- uCGUCGCG-CUGAgUuCAgGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 103977 0.66 0.905045
Target:  5'- cGGCAGCGCGGCcgcgCAgaAGgCCA-CCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGa---GU--UCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 20088 0.66 0.922915
Target:  5'- cGCGGCGCGGC-CcGG-CCAUCgCUagcCCg -3'
miRNA:   3'- uCGUCGCGCUGaGuUCaGGUAG-GA---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.