miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 5' -55 NC_001847.1 + 27611 0.65 0.947673
Target:  5'- cCCGuuAGGCgcggCCAUCGUuccucGUCCG-CUCg -3'
miRNA:   3'- -GGCcuUCCGa---GGUAGCA-----CAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 127007 0.65 0.947673
Target:  5'- cCCGcGAGGCU-CGUCGg--CCcgCCCg -3'
miRNA:   3'- -GGCcUUCCGAgGUAGCacaGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 24194 0.65 0.947673
Target:  5'- cCCGcGAGGCU-CGUCGg--CCcgCCCg -3'
miRNA:   3'- -GGCcUUCCGAgGUAGCacaGGuaGGG- -5'
6684 5' -55 NC_001847.1 + 9732 0.65 0.947243
Target:  5'- uCCGGcggcgccGGGGCagucgCCGUCG-GUCCAcCUCg -3'
miRNA:   3'- -GGCC-------UUCCGa----GGUAGCaCAGGUaGGG- -5'
6684 5' -55 NC_001847.1 + 80851 0.66 0.938625
Target:  5'- uCCGGgcGGCggcgCgCGUCGaggCCGUCCg -3'
miRNA:   3'- -GGCCuuCCGa---G-GUAGCacaGGUAGGg -5'
6684 5' -55 NC_001847.1 + 100835 0.66 0.938625
Target:  5'- cCCGGgcGGCUCCGgccagggcCGgagcgCCggCCCg -3'
miRNA:   3'- -GGCCuuCCGAGGUa-------GCaca--GGuaGGG- -5'
6684 5' -55 NC_001847.1 + 33920 0.66 0.938625
Target:  5'- uCgGGGAGGCUggCCucccCGUGUgCAggCCCg -3'
miRNA:   3'- -GgCCUUCCGA--GGua--GCACAgGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 113488 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 10675 0.66 0.933747
Target:  5'- gCCGGggGGCUCgCccuccgGUCGcGcCCGggcgcggCCCg -3'
miRNA:   3'- -GGCCuuCCGAG-G------UAGCaCaGGUa------GGG- -5'
6684 5' -55 NC_001847.1 + 83726 0.66 0.933747
Target:  5'- gCGGgcGGCUCCGUC-UGcgCCG-CCg -3'
miRNA:   3'- gGCCuuCCGAGGUAGcACa-GGUaGGg -5'
6684 5' -55 NC_001847.1 + 78268 0.66 0.928631
Target:  5'- gCCGGcGGGC-CCGUUGg--CCGcgCCCg -3'
miRNA:   3'- -GGCCuUCCGaGGUAGCacaGGUa-GGG- -5'
6684 5' -55 NC_001847.1 + 101883 0.66 0.928631
Target:  5'- ---aGGGGCUCCAUCGcGUcggCCAgCCCg -3'
miRNA:   3'- ggccUUCCGAGGUAGCaCA---GGUaGGG- -5'
6684 5' -55 NC_001847.1 + 128075 0.66 0.925447
Target:  5'- cCCGGgcGGCUCgCcgCGUG-CCuugguggcgaaagCCCa -3'
miRNA:   3'- -GGCCuuCCGAG-GuaGCACaGGua-----------GGG- -5'
6684 5' -55 NC_001847.1 + 40989 0.66 0.921068
Target:  5'- gCCGGGccgcgcucaccuGCUCCggcGUCGUG-CCGUCCUg -3'
miRNA:   3'- -GGCCUuc----------CGAGG---UAGCACaGGUAGGG- -5'
6684 5' -55 NC_001847.1 + 82 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 102895 0.67 0.917684
Target:  5'- cCCGGGcccgcucuGGGCUCCGccccuggGUCCGgcgCCCc -3'
miRNA:   3'- -GGCCU--------UCCGAGGUagca---CAGGUa--GGG- -5'
6684 5' -55 NC_001847.1 + 55563 0.67 0.917684
Target:  5'- cCCGGAcGGCgCCcgcagcacgAUCGUGUUugCAUCCa -3'
miRNA:   3'- -GGCCUuCCGaGG---------UAGCACAG--GUAGGg -5'
6684 5' -55 NC_001847.1 + 2620 0.67 0.911853
Target:  5'- gCCGGAGGuGCUUCggCGggaccgCCGUCgCCg -3'
miRNA:   3'- -GGCCUUC-CGAGGuaGCaca---GGUAG-GG- -5'
6684 5' -55 NC_001847.1 + 60995 0.67 0.911257
Target:  5'- aCGGcgccgucGAGGCcgCCAUCGgcgccgcgcGUCaCAUCCCc -3'
miRNA:   3'- gGCC-------UUCCGa-GGUAGCa--------CAG-GUAGGG- -5'
6684 5' -55 NC_001847.1 + 39863 0.67 0.909455
Target:  5'- gCCGGuAGGCUUCGUCcacgcggcccggGUCCAggCCg -3'
miRNA:   3'- -GGCCuUCCGAGGUAGca----------CAGGUagGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.