miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 123825 0.66 0.374193
Target:  5'- cGUCcuGGCGuuggagguaguGCCCCGGCCcugaGGCCCcgagACCc -3'
miRNA:   3'- -CAGacCCGC-----------CGGGGCCGG----CCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 81529 0.66 0.374193
Target:  5'- aGUCUGcgcauccguucGGCGGCCgagCUcGCCGGcCCCGCg -3'
miRNA:   3'- -CAGAC-----------CCGCCGG---GGcCGGCC-GGGUGg -5'
6688 5' -68.2 NC_001847.1 + 107154 0.66 0.374193
Target:  5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3'
miRNA:   3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 4341 0.66 0.374193
Target:  5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3'
miRNA:   3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 50354 0.66 0.374193
Target:  5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3'
miRNA:   3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 6365 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 26397 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 58306 0.66 0.374193
Target:  5'- uGUUUGgcgcgcGGUGGCUCCGGCaccggucucugUGGCCCuCCc -3'
miRNA:   3'- -CAGAC------CCGCCGGGGCCG-----------GCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 120182 0.66 0.374193
Target:  5'- cUCUGgauGGUGGUgCUGGCCGcgcgagcggcGCCCGCUc -3'
miRNA:   3'- cAGAC---CCGCCGgGGCCGGC----------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 80613 0.66 0.374193
Target:  5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3'
miRNA:   3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 109178 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 96576 0.66 0.374193
Target:  5'- -cCUccGCGGCUCCGGCagcaGGCgCUGCCa -3'
miRNA:   3'- caGAccCGCCGGGGCCGg---CCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 68801 0.66 0.374193
Target:  5'- aUCgccacGGCGGCgCCCGcGCCccaCCCGCCg -3'
miRNA:   3'- cAGac---CCGCCG-GGGC-CGGcc-GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 129210 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 122411 0.66 0.373435
Target:  5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3'
miRNA:   3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 61940 0.66 0.36666
Target:  5'- cGUCaGcGGCGGCgcggCCCGcGCgGGCCgACUc -3'
miRNA:   3'- -CAGaC-CCGCCG----GGGC-CGgCCGGgUGG- -5'
6688 5' -68.2 NC_001847.1 + 21375 0.66 0.36666
Target:  5'- ---cGGGCcGCCUCGGgCGGCUCGUCa -3'
miRNA:   3'- cagaCCCGcCGGGGCCgGCCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.