miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 74277 0.66 0.375545
Target:  5'- gCGCgGCCGCCCucgcgcuggacGC-CCUGGCgCCGCg- -3'
miRNA:   3'- -GUGaCGGCGGG-----------CGaGGGCCG-GGCGgc -5'
6690 5' -67.8 NC_001847.1 + 65811 0.66 0.375545
Target:  5'- aGC-GCCGCCagcaGCgCCCgaGGCCCGCg- -3'
miRNA:   3'- gUGaCGGCGGg---CGaGGG--CCGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 116960 0.66 0.375545
Target:  5'- uCGCcGCgCGUCCGCcaUgGGCCCGCUGg -3'
miRNA:   3'- -GUGaCG-GCGGGCGagGgCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 93331 0.66 0.375545
Target:  5'- cCGC-GCCGCCCGCccgCgCGGUgCGUCu -3'
miRNA:   3'- -GUGaCGGCGGGCGa--GgGCCGgGCGGc -5'
6690 5' -67.8 NC_001847.1 + 116356 0.66 0.375545
Target:  5'- gCGCcGCCGCCgcggagcucgCGCUgUCGGCC-GCCGc -3'
miRNA:   3'- -GUGaCGGCGG----------GCGAgGGCCGGgCGGC- -5'
6690 5' -67.8 NC_001847.1 + 19561 0.66 0.375545
Target:  5'- aCGCgaucgaCGCCCGCgaucgCCgCGGCCCGUa- -3'
miRNA:   3'- -GUGacg---GCGGGCGa----GG-GCCGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 81771 0.66 0.375545
Target:  5'- gGCagGCgCGCUCGCggugCCCGcGgCCGCCa -3'
miRNA:   3'- gUGa-CG-GCGGGCGa---GGGC-CgGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 18992 0.66 0.375545
Target:  5'- cCGCgGCCGCCagCGC-CUCGGgCCGCgCGc -3'
miRNA:   3'- -GUGaCGGCGG--GCGaGGGCCgGGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 49887 0.66 0.375545
Target:  5'- aGCUGCUGCaCgGCacgugCUgGGCCCgGCCGc -3'
miRNA:   3'- gUGACGGCG-GgCGa----GGgCCGGG-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 82742 0.66 0.375545
Target:  5'- gCGC-GCCGCCCGCgCUgGagcGCuuGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGaGGgC---CGggCGGC- -5'
6690 5' -67.8 NC_001847.1 + 115431 0.66 0.375545
Target:  5'- gGCuUGCCGUCaGCgCCCGGCuCUGCuCGg -3'
miRNA:   3'- gUG-ACGGCGGgCGaGGGCCG-GGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 70929 0.66 0.375545
Target:  5'- gCGCcGCCGCCCGggcacCCCGaCCCGCg- -3'
miRNA:   3'- -GUGaCGGCGGGCga---GGGCcGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 11539 0.66 0.375545
Target:  5'- -uUUGCCGCCUugGCUgggcuugcaaagCCCGGUCCgGCCc -3'
miRNA:   3'- guGACGGCGGG--CGA------------GGGCCGGG-CGGc -5'
6690 5' -67.8 NC_001847.1 + 107358 0.66 0.367974
Target:  5'- ---gGCC-CCCGCgUCuCCGGCgCCGUCGu -3'
miRNA:   3'- gugaCGGcGGGCG-AG-GGCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 38829 0.66 0.367974
Target:  5'- nCAUUGCCGCCg----CCGGcCCCGCCa -3'
miRNA:   3'- -GUGACGGCGGgcgagGGCC-GGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 50100 0.66 0.367974
Target:  5'- gGCUGCCGCgCCGggCggcguagagcgCCGGCUgGCCu -3'
miRNA:   3'- gUGACGGCG-GGCgaG-----------GGCCGGgCGGc -5'
6690 5' -67.8 NC_001847.1 + 52256 0.66 0.367974
Target:  5'- aCGC-GCCGCUucgUGCUCgCGuGCCCGCgCGc -3'
miRNA:   3'- -GUGaCGGCGG---GCGAGgGC-CGGGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 64133 0.66 0.367974
Target:  5'- gCGCgGCCGCCguacUGgaCaugCGGCCCGCCa -3'
miRNA:   3'- -GUGaCGGCGG----GCgaGg--GCCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 107421 0.66 0.367974
Target:  5'- cCACaGCUcgGCCaGCUCggcgcgggCGGCCCGCCGg -3'
miRNA:   3'- -GUGaCGG--CGGgCGAGg-------GCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 84895 0.66 0.367974
Target:  5'- aGCUGCCaCCagCGUUCCaaaGGCCgGCCc -3'
miRNA:   3'- gUGACGGcGG--GCGAGGg--CCGGgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.