miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 29021 0.66 0.383221
Target:  5'- gGCaGCggCGCCCGCg-CCGcGCUCGCCGn -3'
miRNA:   3'- gUGaCG--GCGGGCGagGGC-CGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 57019 0.66 0.383221
Target:  5'- gGC-GCgCGCCCGCUUuuGgcGCCCGCg- -3'
miRNA:   3'- gUGaCG-GCGGGCGAGggC--CGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 134254 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 11436 0.66 0.383221
Target:  5'- uGCUGCCGCCCcauGCguaucaaaaaCUcGCCUGCCGu -3'
miRNA:   3'- gUGACGGCGGG---CGag--------GGcCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 106515 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 3702 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 77071 0.66 0.383221
Target:  5'- cCGCUGCgGCgCGCgcgcgcgCCaaucggCGGCCCGCgCGc -3'
miRNA:   3'- -GUGACGgCGgGCGa------GG------GCCGGGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 128986 0.66 0.383221
Target:  5'- aAUUGCCGCgC-CUCCCuGCUCGCUc -3'
miRNA:   3'- gUGACGGCGgGcGAGGGcCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 102083 0.66 0.383221
Target:  5'- gCGCggGCCGCgCGCgaCCCGGUCaauaaacuccugCGCCGc -3'
miRNA:   3'- -GUGa-CGGCGgGCGa-GGGCCGG------------GCGGC- -5'
6690 5' -67.8 NC_001847.1 + 59632 0.66 0.383221
Target:  5'- ---cGCCGCCCGCgaCCGcgcucuuuugaGCCCGCUc -3'
miRNA:   3'- gugaCGGCGGGCGagGGC-----------CGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 9366 0.66 0.383221
Target:  5'- uCGCuUGCCaugGCCCgGUUCCacaGGCCCuCCGa -3'
miRNA:   3'- -GUG-ACGG---CGGG-CGAGGg--CCGGGcGGC- -5'
6690 5' -67.8 NC_001847.1 + 133746 0.66 0.383221
Target:  5'- --gUGCCGCCgCGCgaguaCCGGCagcgcgugCUGCCGg -3'
miRNA:   3'- gugACGGCGG-GCGag---GGCCG--------GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 131834 0.66 0.383221
Target:  5'- gGCaGCggCGCCCGCg-CCGcGCUCGCCGn -3'
miRNA:   3'- gUGaCG--GCGGGCGagGGC-CGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 58426 0.66 0.382449
Target:  5'- ----cCCGCCCGaccguccUUCCCGGCgCGCCu -3'
miRNA:   3'- gugacGGCGGGC-------GAGGGCCGgGCGGc -5'
6690 5' -67.8 NC_001847.1 + 80699 0.66 0.378603
Target:  5'- gGCUcGUC-CCCGCcccccucgucucugCCCGGgCCGCCGa -3'
miRNA:   3'- gUGA-CGGcGGGCGa-------------GGGCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 31345 0.66 0.378603
Target:  5'- uGCcGCCGCCgGCggcggaagccccgCCGGCCCggguGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGag-----------GGCCGGG----CGGC- -5'
6690 5' -67.8 NC_001847.1 + 134158 0.66 0.378603
Target:  5'- uGCcGCCGCCgGCggcggaagccccgCCGGCCCggguGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGag-----------GGCCGGG----CGGC- -5'
6690 5' -67.8 NC_001847.1 + 115431 0.66 0.375545
Target:  5'- gGCuUGCCGUCaGCgCCCGGCuCUGCuCGg -3'
miRNA:   3'- gUG-ACGGCGGgCGaGGGCCG-GGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 11539 0.66 0.375545
Target:  5'- -uUUGCCGCCUugGCUgggcuugcaaagCCCGGUCCgGCCc -3'
miRNA:   3'- guGACGGCGGG--CGA------------GGGCCGGG-CGGc -5'
6690 5' -67.8 NC_001847.1 + 70929 0.66 0.375545
Target:  5'- gCGCcGCCGCCCGggcacCCCGaCCCGCg- -3'
miRNA:   3'- -GUGaCGGCGGGCga---GGGCcGGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.