miRNA display CGI


Results 21 - 40 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 21876 0.66 0.359767
Target:  5'- gGCUGCgGCgCGCUgCCGaggccgaGCCCGCg- -3'
miRNA:   3'- gUGACGgCGgGCGAgGGC-------CGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 107358 0.66 0.367974
Target:  5'- ---gGCC-CCCGCgUCuCCGGCgCCGUCGu -3'
miRNA:   3'- gugaCGGcGGGCG-AG-GGCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 9559 0.66 0.360507
Target:  5'- gCGCUGCagccguccaGCCCGCcgCCCGcGgCCGCg- -3'
miRNA:   3'- -GUGACGg--------CGGGCGa-GGGC-CgGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 39788 0.66 0.360507
Target:  5'- gCGCcGCCuggcCCCGCUCCCcuGGCUgCGCCc -3'
miRNA:   3'- -GUGaCGGc---GGGCGAGGG--CCGG-GCGGc -5'
6690 5' -67.8 NC_001847.1 + 55660 0.66 0.360507
Target:  5'- gACgUGCgCGCCgCGCU-CCGGCUCGCg- -3'
miRNA:   3'- gUG-ACG-GCGG-GCGAgGGCCGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 71835 0.66 0.360507
Target:  5'- gCGCUGaaccaCGCgCUGCUggCCCGGUgcuuCCGCCGc -3'
miRNA:   3'- -GUGACg----GCG-GGCGA--GGGCCG----GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 38969 0.66 0.367222
Target:  5'- cCGCUGCCgGCCCcgauuacgguuuuGgUUCCGGCCCcgguuCCGg -3'
miRNA:   3'- -GUGACGG-CGGG-------------CgAGGGCCGGGc----GGC- -5'
6690 5' -67.8 NC_001847.1 + 11539 0.66 0.375545
Target:  5'- -uUUGCCGCCUugGCUgggcuugcaaagCCCGGUCCgGCCc -3'
miRNA:   3'- guGACGGCGGG--CGA------------GGGCCGGG-CGGc -5'
6690 5' -67.8 NC_001847.1 + 120959 0.66 0.353148
Target:  5'- cCGCcGCCaGCCC-CUCCCGuGCCUuuagcgcgGCCGc -3'
miRNA:   3'- -GUGaCGG-CGGGcGAGGGC-CGGG--------CGGC- -5'
6690 5' -67.8 NC_001847.1 + 116823 0.66 0.360507
Target:  5'- gGCaGCUGCuCCGCgugauUCgCCGGCUgGCCGu -3'
miRNA:   3'- gUGaCGGCG-GGCG-----AG-GGCCGGgCGGC- -5'
6690 5' -67.8 NC_001847.1 + 21358 0.66 0.345895
Target:  5'- gCGC-GCCGUCgGCggCUCGGgCCGCCu -3'
miRNA:   3'- -GUGaCGGCGGgCGa-GGGCCgGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 82934 0.66 0.360507
Target:  5'- uCGCUGUCGaggCCGCgacCCgCGGCCagGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GG-GCCGGg-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 70929 0.66 0.375545
Target:  5'- gCGCcGCCGCCCGggcacCCCGaCCCGCg- -3'
miRNA:   3'- -GUGaCGGCGGGCga---GGGCcGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 101372 0.66 0.345895
Target:  5'- gCGCUugcGCCGCgggggCUGC-CCgCGGCgCCGCCGg -3'
miRNA:   3'- -GUGA---CGGCG-----GGCGaGG-GCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 63141 0.66 0.353148
Target:  5'- gGCUGUgGCaCCGgaUCCCGGCgCGCa- -3'
miRNA:   3'- gUGACGgCG-GGCg-AGGGCCGgGCGgc -5'
6690 5' -67.8 NC_001847.1 + 68444 0.66 0.353148
Target:  5'- aGCgGCCgcagagguccgcGCCCGCggCCGGggcCCCGCCGc -3'
miRNA:   3'- gUGaCGG------------CGGGCGagGGCC---GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 20100 0.66 0.353148
Target:  5'- aGCUGgaGCuCUGC-CCCGGaCUCGCCGc -3'
miRNA:   3'- gUGACggCG-GGCGaGGGCC-GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 38829 0.66 0.367974
Target:  5'- nCAUUGCCGCCg----CCGGcCCCGCCa -3'
miRNA:   3'- -GUGACGGCGGgcgagGGCC-GGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 34992 0.66 0.375545
Target:  5'- gCGCUGUCgGCCCuCuUCCCGG-CCGCgGa -3'
miRNA:   3'- -GUGACGG-CGGGcG-AGGGCCgGGCGgC- -5'
6690 5' -67.8 NC_001847.1 + 82868 0.66 0.360507
Target:  5'- gCACgUGCuCGCCCGUg-CgGGCgCGCCGc -3'
miRNA:   3'- -GUG-ACG-GCGGGCGagGgCCGgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.