miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 21358 0.66 0.345895
Target:  5'- gCGC-GCCGUCgGCggCUCGGgCCGCCu -3'
miRNA:   3'- -GUGaCGGCGGgCGa-GGGCCgGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 68444 0.66 0.353148
Target:  5'- aGCgGCCgcagagguccgcGCCCGCggCCGGggcCCCGCCGc -3'
miRNA:   3'- gUGaCGG------------CGGGCGagGGCC---GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 39788 0.66 0.360507
Target:  5'- gCGCcGCCuggcCCCGCUCCCcuGGCUgCGCCc -3'
miRNA:   3'- -GUGaCGGc---GGGCGAGGG--CCGG-GCGGc -5'
6690 5' -67.8 NC_001847.1 + 133532 0.66 0.345895
Target:  5'- uGCUGCCGCggcgcagugcgCCGCgCgCUGGCCCGagCGg -3'
miRNA:   3'- gUGACGGCG-----------GGCGaG-GGCCGGGCg-GC- -5'
6690 5' -67.8 NC_001847.1 + 38770 0.66 0.360507
Target:  5'- uGCcGCCGCCgGC-CCCGccauuGCcaCCGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGaGGGC-----CG--GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 134682 0.66 0.353148
Target:  5'- uGCUGCCGCcgCCGC-CgCCGcCgCCGCCGc -3'
miRNA:   3'- gUGACGGCG--GGCGaG-GGCcG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 55660 0.66 0.360507
Target:  5'- gACgUGCgCGCCgCGCU-CCGGCUCGCg- -3'
miRNA:   3'- gUG-ACG-GCGG-GCGAgGGCCGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 63141 0.66 0.353148
Target:  5'- gGCUGUgGCaCCGgaUCCCGGCgCGCa- -3'
miRNA:   3'- gUGACGgCG-GGCg-AGGGCCGgGCGgc -5'
6690 5' -67.8 NC_001847.1 + 20100 0.66 0.353148
Target:  5'- aGCUGgaGCuCUGC-CCCGGaCUCGCCGc -3'
miRNA:   3'- gUGACggCG-GGCGaGGGCC-GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 82934 0.66 0.360507
Target:  5'- uCGCUGUCGaggCCGCgacCCgCGGCCagGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GG-GCCGGg-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 101372 0.66 0.345895
Target:  5'- gCGCUugcGCCGCgggggCUGC-CCgCGGCgCCGCCGg -3'
miRNA:   3'- -GUGA---CGGCG-----GGCGaGG-GCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 21876 0.66 0.359767
Target:  5'- gGCUGCgGCgCGCUgCCGaggccgaGCCCGCg- -3'
miRNA:   3'- gUGACGgCGgGCGAgGGC-------CGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 87442 0.66 0.345895
Target:  5'- aGCUGCUGCgCgCGCUCaaCGGCcCCGCgGc -3'
miRNA:   3'- gUGACGGCG-G-GCGAGg-GCCG-GGCGgC- -5'
6690 5' -67.8 NC_001847.1 + 129454 0.66 0.353148
Target:  5'- aACUGCCggGUCUggGCggcCCCGGCCgGCCc -3'
miRNA:   3'- gUGACGG--CGGG--CGa--GGGCCGGgCGGc -5'
6690 5' -67.8 NC_001847.1 + 120959 0.66 0.353148
Target:  5'- cCGCcGCCaGCCC-CUCCCGuGCCUuuagcgcgGCCGc -3'
miRNA:   3'- -GUGaCGG-CGGGcGAGGGC-CGGG--------CGGC- -5'
6690 5' -67.8 NC_001847.1 + 75115 0.66 0.353148
Target:  5'- gGC-GCuUGCCCGagaaggCCCGGgcCCCGCCGg -3'
miRNA:   3'- gUGaCG-GCGGGCga----GGGCC--GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 9559 0.66 0.360507
Target:  5'- gCGCUGCagccguccaGCCCGCcgCCCGcGgCCGCg- -3'
miRNA:   3'- -GUGACGg--------CGGGCGa-GGGC-CgGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 38808 0.66 0.345895
Target:  5'- cCAUUGCCGCCg----CCGGcCCCGCCa -3'
miRNA:   3'- -GUGACGGCGGgcgagGGCC-GGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 16224 0.66 0.345895
Target:  5'- uGCaGCC-UCCGCgUCCCGGCCUcgGCCc -3'
miRNA:   3'- gUGaCGGcGGGCG-AGGGCCGGG--CGGc -5'
6690 5' -67.8 NC_001847.1 + 82868 0.66 0.360507
Target:  5'- gCACgUGCuCGCCCGUg-CgGGCgCGCCGc -3'
miRNA:   3'- -GUG-ACG-GCGGGCGagGgCCGgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.