miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 76 0.73 0.126846
Target:  5'- gGCggGCCcggGCCCGCUCUgGGCuCCGCCc -3'
miRNA:   3'- gUGa-CGG---CGGGCGAGGgCCG-GGCGGc -5'
6690 5' -67.8 NC_001847.1 + 130 0.68 0.285476
Target:  5'- gGCc-CCGCCCGCgggCCUcgGGCCCcgGCCGg -3'
miRNA:   3'- gUGacGGCGGGCGa--GGG--CCGGG--CGGC- -5'
6690 5' -67.8 NC_001847.1 + 283 0.67 0.31661
Target:  5'- gGCcGCCgaGCCCGCgcgggcgccgucCCCGcGcCCCGCCGg -3'
miRNA:   3'- gUGaCGG--CGGGCGa-----------GGGC-C-GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 494 0.75 0.085689
Target:  5'- cCGC-GCCuccgcGCCUGCUgCCGGCCCGCCc -3'
miRNA:   3'- -GUGaCGG-----CGGGCGAgGGCCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 604 0.69 0.244478
Target:  5'- cCGCgGCCGCuCCGCagcggcgCgCGGCCCGCg- -3'
miRNA:   3'- -GUGaCGGCG-GGCGa------GgGCCGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 761 0.68 0.267274
Target:  5'- gGCgagGCCgGCCCGC-CgCCGGCggCGCCGg -3'
miRNA:   3'- gUGa--CGG-CGGGCGaG-GGCCGg-GCGGC- -5'
6690 5' -67.8 NC_001847.1 + 881 0.72 0.139694
Target:  5'- gGCgGCgGCCCGCgCCgGGgCCGCCGc -3'
miRNA:   3'- gUGaCGgCGGGCGaGGgCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 915 0.72 0.138357
Target:  5'- gGCcGCCGCCCGCcggcgccgggaagCCCGaGCCCGCg- -3'
miRNA:   3'- gUGaCGGCGGGCGa------------GGGC-CGGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 933 0.7 0.20374
Target:  5'- cCACcGCCGCCCuCggCCCGcGCgCGCCGc -3'
miRNA:   3'- -GUGaCGGCGGGcGa-GGGC-CGgGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 962 0.66 0.353148
Target:  5'- gACUG-CGCCgGCaCCCGGgCCGgCGg -3'
miRNA:   3'- gUGACgGCGGgCGaGGGCCgGGCgGC- -5'
6690 5' -67.8 NC_001847.1 + 1016 0.67 0.311248
Target:  5'- cCACcagGCCG-CCGC-CCgCGGCgCGCCGc -3'
miRNA:   3'- -GUGa--CGGCgGGCGaGG-GCCGgGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 1161 0.68 0.267274
Target:  5'- --aUGCCGCgCgCGCUCCCaGCCCcggcGCCu -3'
miRNA:   3'- gugACGGCG-G-GCGAGGGcCGGG----CGGc -5'
6690 5' -67.8 NC_001847.1 + 1228 0.68 0.282994
Target:  5'- gCGC-GCCGCCCGCaggccagguacaCCGGCCgcagcggcgCGCCGa -3'
miRNA:   3'- -GUGaCGGCGGGCGag----------GGCCGG---------GCGGC- -5'
6690 5' -67.8 NC_001847.1 + 1539 0.71 0.165074
Target:  5'- cUugUGCCGCCCaagCCC-GCCCGCCc -3'
miRNA:   3'- -GugACGGCGGGcgaGGGcCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 1723 0.68 0.261419
Target:  5'- aGCcGCCGCCgCGC-CgCGGCCaGCCGc -3'
miRNA:   3'- gUGaCGGCGG-GCGaGgGCCGGgCGGC- -5'
6690 5' -67.8 NC_001847.1 + 1829 0.67 0.311248
Target:  5'- uCACguccgGCgCGCCCGUccagcgCCCGGCCCaGgCGu -3'
miRNA:   3'- -GUGa----CG-GCGGGCGa-----GGGCCGGG-CgGC- -5'
6690 5' -67.8 NC_001847.1 + 1941 0.66 0.367974
Target:  5'- cCACUcggGCCGCCgGCgCUCGuCCuCGCCGg -3'
miRNA:   3'- -GUGA---CGGCGGgCGaGGGCcGG-GCGGC- -5'
6690 5' -67.8 NC_001847.1 + 2310 0.73 0.136374
Target:  5'- gGCUGCCcauggcgacacGCCCGCUgCgCGGaaCCCGCCGu -3'
miRNA:   3'- gUGACGG-----------CGGGCGAgG-GCC--GGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 2346 0.73 0.129952
Target:  5'- gGCUcCCGCCgCGCcggCCCGGCCgCGUCGg -3'
miRNA:   3'- gUGAcGGCGG-GCGa--GGGCCGG-GCGGC- -5'
6690 5' -67.8 NC_001847.1 + 2507 0.67 0.304643
Target:  5'- uCGCgaggGCCGCCUcgcgcuuuGCUgCCGGgCCGCgGg -3'
miRNA:   3'- -GUGa---CGGCGGG--------CGAgGGCCgGGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.