Results 1 - 20 of 559 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6690 | 5' | -67.8 | NC_001847.1 | + | 77200 | 0.81 | 0.031256 |
Target: 5'- gCGCUGCUGCCCGCgacggagCCgCGGgCCGCCGg -3' miRNA: 3'- -GUGACGGCGGGCGa------GG-GCCgGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 92405 | 0.74 | 0.10412 |
Target: 5'- uGCUGuCCGcCCCGCcgCCCGcgcggccGCCCGCCGc -3' miRNA: 3'- gUGAC-GGC-GGGCGa-GGGC-------CGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 102231 | 0.74 | 0.099372 |
Target: 5'- uCGCUcCCGUCCGCggcCCCGGCuuccCCGCCGg -3' miRNA: 3'- -GUGAcGGCGGGCGa--GGGCCG----GGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 131862 | 0.75 | 0.096956 |
Target: 5'- aGCUGCgCGCCgUGCUCgCCGGCCgcgcggCGCCGg -3' miRNA: 3'- gUGACG-GCGG-GCGAG-GGCCGG------GCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 88640 | 0.75 | 0.096956 |
Target: 5'- gCGCUGCCGCUgGCaacgCUCGGCCaCGCUGc -3' miRNA: 3'- -GUGACGGCGGgCGa---GGGCCGG-GCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 62437 | 0.75 | 0.096718 |
Target: 5'- uGCUGCCGCCCaccgggcggccGCUcucCCCGGCCUcagcaggGCCGg -3' miRNA: 3'- gUGACGGCGGG-----------CGA---GGGCCGGG-------CGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 106139 | 0.75 | 0.094596 |
Target: 5'- cCGCUGCCGCCgGCg-CCGGCCU-CCGg -3' miRNA: 3'- -GUGACGGCGGgCGagGGCCGGGcGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 134712 | 0.75 | 0.094596 |
Target: 5'- uGCUGCCGCcgccgCCGC-CCCcGCCCGCCc -3' miRNA: 3'- gUGACGGCG-----GGCGaGGGcCGGGCGGc -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 102352 | 0.75 | 0.09229 |
Target: 5'- aCGC-GCCGUCCGCcCCCGGCCCuCCc -3' miRNA: 3'- -GUGaCGGCGGGCGaGGGCCGGGcGGc -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 494 | 0.75 | 0.085689 |
Target: 5'- cCGC-GCCuccgcGCCUGCUgCCGGCCCGCCc -3' miRNA: 3'- -GUGaCGG-----CGGGCGAgGGCCGGGCGGc -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 106045 | 0.76 | 0.077584 |
Target: 5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3' miRNA: 3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 19647 | 0.76 | 0.071992 |
Target: 5'- gCGCgGCCGCuuGCgggCCCGGC-CGCCGg -3' miRNA: 3'- -GUGaCGGCGggCGa--GGGCCGgGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 10433 | 0.77 | 0.066788 |
Target: 5'- gCGCUGCCGCCCccGCgCCCGGCUCcccugGCCGc -3' miRNA: 3'- -GUGACGGCGGG--CGaGGGCCGGG-----CGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 66522 | 0.78 | 0.058912 |
Target: 5'- gCGC-GCCGCCuUGCggucCCCGGCCCGCUGg -3' miRNA: 3'- -GUGaCGGCGG-GCGa---GGGCCGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 81378 | 0.78 | 0.057448 |
Target: 5'- uGCUGCCGCCCucGCcgCCuCGGgCCGCCGg -3' miRNA: 3'- gUGACGGCGGG--CGa-GG-GCCgGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 9623 | 0.79 | 0.046944 |
Target: 5'- aGCUG-CGCCCGCcgccgCgCCGGCCCGCCGc -3' miRNA: 3'- gUGACgGCGGGCGa----G-GGCCGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 9340 | 0.79 | 0.04577 |
Target: 5'- aGCUGCaCGCCCGC---CGGCCCGCCGa -3' miRNA: 3'- gUGACG-GCGGGCGaggGCCGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 48760 | 0.79 | 0.043508 |
Target: 5'- aGCcGCgCGCCCGCcgCCgCGGCCCGCCGc -3' miRNA: 3'- gUGaCG-GCGGGCGa-GG-GCCGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 77475 | 0.8 | 0.041356 |
Target: 5'- gCGCcgGgCGCCCGg-CCCGGCCCGCCGg -3' miRNA: 3'- -GUGa-CgGCGGGCgaGGGCCGGGCGGC- -5' |
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6690 | 5' | -67.8 | NC_001847.1 | + | 130070 | 1.06 | 0.000377 |
Target: 5'- gCACUGCCGCCCGCUCCCGGCCCGCCGu -3' miRNA: 3'- -GUGACGGCGGGCGAGGGCCGGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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