miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 130070 1.06 0.000377
Target:  5'- gCACUGCCGCCCGCUCCCGGCCCGCCGu -3'
miRNA:   3'- -GUGACGGCGGGCGAGGGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 27257 1.06 0.000377
Target:  5'- gCACUGCCGCCCGCUCCCGGCCCGCCGu -3'
miRNA:   3'- -GUGACGGCGGGCGAGGGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 77200 0.81 0.031256
Target:  5'- gCGCUGCUGCCCGCgacggagCCgCGGgCCGCCGg -3'
miRNA:   3'- -GUGACGGCGGGCGa------GG-GCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 79865 0.81 0.034612
Target:  5'- gACUGCCGCCCG-UCCgGGCCCGgCGc -3'
miRNA:   3'- gUGACGGCGGGCgAGGgCCGGGCgGC- -5'
6690 5' -67.8 NC_001847.1 + 38206 0.8 0.040319
Target:  5'- -cCUGCCGCCCGCggaggCCCGGgCCGCgCGc -3'
miRNA:   3'- guGACGGCGGGCGa----GGGCCgGGCG-GC- -5'
6690 5' -67.8 NC_001847.1 + 77475 0.8 0.041356
Target:  5'- gCGCcgGgCGCCCGg-CCCGGCCCGCCGg -3'
miRNA:   3'- -GUGa-CgGCGGGCgaGGGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 48760 0.79 0.043508
Target:  5'- aGCcGCgCGCCCGCcgCCgCGGCCCGCCGc -3'
miRNA:   3'- gUGaCG-GCGGGCGa-GG-GCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 72662 0.79 0.044625
Target:  5'- cCGCgGCCGCCCGCcggcgacCCCGGCCCuGCUGa -3'
miRNA:   3'- -GUGaCGGCGGGCGa------GGGCCGGG-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 9340 0.79 0.04577
Target:  5'- aGCUGCaCGCCCGC---CGGCCCGCCGa -3'
miRNA:   3'- gUGACG-GCGGGCGaggGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 9623 0.79 0.046944
Target:  5'- aGCUG-CGCCCGCcgccgCgCCGGCCCGCCGc -3'
miRNA:   3'- gUGACgGCGGGCGa----G-GGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 81378 0.78 0.057448
Target:  5'- uGCUGCCGCCCucGCcgCCuCGGgCCGCCGg -3'
miRNA:   3'- gUGACGGCGGG--CGa-GG-GCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 103839 0.78 0.058912
Target:  5'- aCGCaGCagaGCCCGCUcCCCGcGCCCGCCu -3'
miRNA:   3'- -GUGaCGg--CGGGCGA-GGGC-CGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 66522 0.78 0.058912
Target:  5'- gCGC-GCCGCCuUGCggucCCCGGCCCGCUGg -3'
miRNA:   3'- -GUGaCGGCGG-GCGa---GGGCCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 120066 0.77 0.060412
Target:  5'- cCGCUGCCGCagGCgaucCCCGGgCCGCCGg -3'
miRNA:   3'- -GUGACGGCGggCGa---GGGCCgGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 87585 0.77 0.063523
Target:  5'- gCGCgGCCGCCgGgCUcCCCGcGCCCGCCGu -3'
miRNA:   3'- -GUGaCGGCGGgC-GA-GGGC-CGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 10433 0.77 0.066788
Target:  5'- gCGCUGCCGCCCccGCgCCCGGCUCcccugGCCGc -3'
miRNA:   3'- -GUGACGGCGGG--CGaGGGCCGGG-----CGGC- -5'
6690 5' -67.8 NC_001847.1 + 19647 0.76 0.071992
Target:  5'- gCGCgGCCGCuuGCgggCCCGGC-CGCCGg -3'
miRNA:   3'- -GUGaCGGCGggCGa--GGGCCGgGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 61951 0.76 0.073811
Target:  5'- cCGCaGCCuGCCCGCgCgCCGuGCCCGCCGg -3'
miRNA:   3'- -GUGaCGG-CGGGCGaG-GGC-CGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 106045 0.76 0.077584
Target:  5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 3232 0.76 0.077584
Target:  5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.