miRNA display CGI


Results 41 - 60 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 124712 0.72 0.536299
Target:  5'- gUGCCGcCAA---AGCGACCCCGCCGc -3'
miRNA:   3'- uGCGGUcGUUaugUUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 85310 0.72 0.536299
Target:  5'- gGCGCgGGCAuUGCcGCGggcgcucucGCCCCGCCc -3'
miRNA:   3'- -UGCGgUCGUuAUGuUGC---------UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 102185 0.72 0.540297
Target:  5'- uACGCCGGCGAcaaaUAuuucucgggcacggcCGACGGCCCCGugcCCGg -3'
miRNA:   3'- -UGCGGUCGUU----AU---------------GUUGCUGGGGC---GGC- -5'
6727 5' -56.3 NC_001875.2 + 75258 0.72 0.566509
Target:  5'- gGCGUCGGCGAUgGCGGCGGCgUCGgCGa -3'
miRNA:   3'- -UGCGGUCGUUA-UGUUGCUGgGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 66261 0.71 0.576681
Target:  5'- -gGCCAGCuGUACAcgggcaucacgaGCGACCUgaGCCGg -3'
miRNA:   3'- ugCGGUCGuUAUGU------------UGCUGGGg-CGGC- -5'
6727 5' -56.3 NC_001875.2 + 113623 0.71 0.586892
Target:  5'- cGCGgCGGCAAgagcgGCGACGGCgCCGCg- -3'
miRNA:   3'- -UGCgGUCGUUa----UGUUGCUGgGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 5278 0.71 0.586892
Target:  5'- cUGCCAcGCGAUGgcCGACGugCCCGCg- -3'
miRNA:   3'- uGCGGU-CGUUAU--GUUGCugGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 84361 0.71 0.586892
Target:  5'- uGCGCCGGUAgGUGC-GCGGCC-UGCCGg -3'
miRNA:   3'- -UGCGGUCGU-UAUGuUGCUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 130127 0.71 0.586892
Target:  5'- gGCGCgugcuauuuuUAGCAGUGCGucagcgGCGACCCUGCUu -3'
miRNA:   3'- -UGCG----------GUCGUUAUGU------UGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 54906 0.71 0.586892
Target:  5'- uGCGCUGGCGGUGcCGGCGguGCgCCCGCaCGg -3'
miRNA:   3'- -UGCGGUCGUUAU-GUUGC--UG-GGGCG-GC- -5'
6727 5' -56.3 NC_001875.2 + 12120 0.71 0.597137
Target:  5'- uCGCCAGUGcuucUGCAACG-CgCCGCCGg -3'
miRNA:   3'- uGCGGUCGUu---AUGUUGCuGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 72214 0.71 0.597137
Target:  5'- -aGCCAGCGAcGCGGCGuccGCCaauCCGCCa -3'
miRNA:   3'- ugCGGUCGUUaUGUUGC---UGG---GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 95410 0.71 0.597137
Target:  5'- cGCGCCGGCGucGCAAagguaaGGCCUCGCgGc -3'
miRNA:   3'- -UGCGGUCGUuaUGUUg-----CUGGGGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 98795 0.71 0.597137
Target:  5'- aACGCUAucGCGcgGC-GCGGCgCCCGCCGc -3'
miRNA:   3'- -UGCGGU--CGUuaUGuUGCUG-GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 99401 0.71 0.597137
Target:  5'- gGCGCCAGCGGgucgcGCAGCGcauuguugGCCagCGCCGc -3'
miRNA:   3'- -UGCGGUCGUUa----UGUUGC--------UGGg-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 7447 0.71 0.597137
Target:  5'- cGCGCCGGCGAuUGCGGCGGuguaCgGCCGa -3'
miRNA:   3'- -UGCGGUCGUU-AUGUUGCUgg--GgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 79298 0.71 0.607408
Target:  5'- cACGCCguGGCA----AACGAgCCCGCCGc -3'
miRNA:   3'- -UGCGG--UCGUuaugUUGCUgGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 9312 0.71 0.607408
Target:  5'- cGCGCCGgacGCAAU-CGGCGaagcuGCCCgGCCGg -3'
miRNA:   3'- -UGCGGU---CGUUAuGUUGC-----UGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 3979 0.71 0.617698
Target:  5'- cGCGCCGGCGugcgccgACGACGGCCgguggucgaCGCUGa -3'
miRNA:   3'- -UGCGGUCGUua-----UGUUGCUGGg--------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 49856 0.71 0.627999
Target:  5'- cGCGCCGGC----CGGCGcGCCuuGCCGg -3'
miRNA:   3'- -UGCGGUCGuuauGUUGC-UGGggCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.