miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 85675 0.74 0.440535
Target:  5'- cGCGCCGGCc-UGCAGCGACUCgaccagcuugcgCGCCGc -3'
miRNA:   3'- -UGCGGUCGuuAUGUUGCUGGG------------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 130517 0.74 0.440535
Target:  5'- gGCGCgugcuacuuuUAGCGGUgcgucaGCGACGACCCUGCCu -3'
miRNA:   3'- -UGCG----------GUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 19256 0.74 0.440535
Target:  5'- cGCGCaCAGCA--AC-ACGGCCCUGUCGg -3'
miRNA:   3'- -UGCG-GUCGUuaUGuUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 9902 0.74 0.449689
Target:  5'- gACGCCAucGC-GUACAACGACagUCGCCGg -3'
miRNA:   3'- -UGCGGU--CGuUAUGUUGCUGg-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 101256 0.74 0.449689
Target:  5'- uGCGUCAGCG-----GCGACCCCGCUu -3'
miRNA:   3'- -UGCGGUCGUuauguUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 31854 0.74 0.458947
Target:  5'- uGCGCCGGCGGcgcgcaaGCGGCGGUCCaCGCCGg -3'
miRNA:   3'- -UGCGGUCGUUa------UGUUGCUGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 119976 0.73 0.476811
Target:  5'- cGCGCacaccgcaaaaaaCAGCAAauagcaugauuUACAcCGACCCCGCCa -3'
miRNA:   3'- -UGCG-------------GUCGUU-----------AUGUuGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 110341 0.73 0.477761
Target:  5'- aACGCCAGCGcggACGagcgcaguGCGACgCCGCCc -3'
miRNA:   3'- -UGCGGUCGUua-UGU--------UGCUGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 48233 0.73 0.486351
Target:  5'- cGCGUCAauugcuGCAAguugagcUACGGCGgcGCCCCGCCGg -3'
miRNA:   3'- -UGCGGU------CGUU-------AUGUUGC--UGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 5847 0.73 0.486351
Target:  5'- cGCGCCcgcguAGCAGUGCAccagcacGCGuuuGCCCuCGCCGa -3'
miRNA:   3'- -UGCGG-----UCGUUAUGU-------UGC---UGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 40251 0.73 0.487309
Target:  5'- aGCGCCAGcCAGUggcgcgucagcGCcGCGGCCUCGUCGu -3'
miRNA:   3'- -UGCGGUC-GUUA-----------UGuUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 128750 0.73 0.496947
Target:  5'- cGCGCCccGGCGcGUGCAcgccguggGCGACCCCGgCGc -3'
miRNA:   3'- -UGCGG--UCGU-UAUGU--------UGCUGGGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 85464 0.73 0.496947
Target:  5'- aGCGCCcgcGGCAAUGCccGCG-CCCgCGCCGc -3'
miRNA:   3'- -UGCGG---UCGUUAUGu-UGCuGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 84924 0.73 0.496947
Target:  5'- aGCGgCAGCGAgauuccguuuUGCGACGACCCCGa-- -3'
miRNA:   3'- -UGCgGUCGUU----------AUGUUGCUGGGGCggc -5'
6727 5' -56.3 NC_001875.2 + 122911 0.73 0.50667
Target:  5'- uGCGCCuguGGCGAguCGGCGcuaaACCCCGCCa -3'
miRNA:   3'- -UGCGG---UCGUUauGUUGC----UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 37503 0.73 0.50667
Target:  5'- -gGCCGGCGAcggugcggACGACGcGCCCUGCCu -3'
miRNA:   3'- ugCGGUCGUUa-------UGUUGC-UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 31679 0.73 0.516473
Target:  5'- -gGCCAGCGugccgGCGugGACCgCCGCUu -3'
miRNA:   3'- ugCGGUCGUua---UGUugCUGG-GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 7610 0.72 0.526351
Target:  5'- -gGCCGGCAGUGCAAggacacguacacCGACCUgcgcacacaCGCCGa -3'
miRNA:   3'- ugCGGUCGUUAUGUU------------GCUGGG---------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 18481 0.72 0.533308
Target:  5'- uGCGCC-GCGccGCAGCGACgcagccgcgcccgaCCCGCCGc -3'
miRNA:   3'- -UGCGGuCGUuaUGUUGCUG--------------GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 85310 0.72 0.536299
Target:  5'- gGCGCgGGCAuUGCcGCGggcgcucucGCCCCGCCc -3'
miRNA:   3'- -UGCGgUCGUuAUGuUGC---------UGGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.