Results 1 - 20 of 249 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6727 | 5' | -56.3 | NC_001875.2 | + | 417 | 1.08 | 0.002832 |
Target: 5'- gACGCCAGCAAUACAACGACCCCGCCGc -3' miRNA: 3'- -UGCGGUCGUUAUGUUGCUGGGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 39201 | 0.87 | 0.0686 |
Target: 5'- uGCGCUuGCGGUACAGCG-CCCCGCCGa -3' miRNA: 3'- -UGCGGuCGUUAUGUUGCuGGGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 68723 | 0.84 | 0.108108 |
Target: 5'- gGCGCCAcGCGGUGC-GCGACCgCCGCCGc -3' miRNA: 3'- -UGCGGU-CGUUAUGuUGCUGG-GGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 110741 | 0.81 | 0.163978 |
Target: 5'- gGCGCguGCAGUuuaagcGCGGCGACCgCCGCCGc -3' miRNA: 3'- -UGCGguCGUUA------UGUUGCUGG-GGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 24529 | 0.8 | 0.200753 |
Target: 5'- uGCGUCAGCA--ACGGCGACCCCGUUu -3' miRNA: 3'- -UGCGGUCGUuaUGUUGCUGGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 122142 | 0.79 | 0.238621 |
Target: 5'- uCGCUGGCGG-GCAACGugCCCGCCa -3' miRNA: 3'- uGCGGUCGUUaUGUUGCugGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 54250 | 0.78 | 0.250488 |
Target: 5'- uGCGCUGGCAGcGCAuCGACCCCGUgGg -3' miRNA: 3'- -UGCGGUCGUUaUGUuGCUGGGGCGgC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 23093 | 0.78 | 0.275676 |
Target: 5'- cGCGCC-GC-GUGCAGCuGCCCCGCCa -3' miRNA: 3'- -UGCGGuCGuUAUGUUGcUGGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 37595 | 0.77 | 0.289012 |
Target: 5'- aGCGCCGcggccggccGCAcgGCGGCGugCUCGCCGa -3' miRNA: 3'- -UGCGGU---------CGUuaUGUUGCugGGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 97188 | 0.77 | 0.289012 |
Target: 5'- uGCGCCGGCAAgcguuUACGACGcUgCCGCCGu -3' miRNA: 3'- -UGCGGUCGUU-----AUGUUGCuGgGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 38041 | 0.77 | 0.309956 |
Target: 5'- cGCGCCAGCAAgccGCuggcGCGGCCC-GCCGu -3' miRNA: 3'- -UGCGGUCGUUa--UGu---UGCUGGGgCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 130248 | 0.76 | 0.347389 |
Target: 5'- gUGCUAGCGGUgccucaGCGGCGACCCUGCUu -3' miRNA: 3'- uGCGGUCGUUA------UGUUGCUGGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 98818 | 0.76 | 0.363241 |
Target: 5'- cACGUCuccgaauuguGCAcaAUGCAGCGGCCCuCGCCGg -3' miRNA: 3'- -UGCGGu---------CGU--UAUGUUGCUGGG-GCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 32804 | 0.75 | 0.371353 |
Target: 5'- cGCGCCGGCAAgcucgGCgAACGGCgCCGCUu -3' miRNA: 3'- -UGCGGUCGUUa----UG-UUGCUGgGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 29440 | 0.75 | 0.396419 |
Target: 5'- cACGCCA-CAcgACcGCG-CCCCGCCGg -3' miRNA: 3'- -UGCGGUcGUuaUGuUGCuGGGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 39117 | 0.75 | 0.405014 |
Target: 5'- cGCGCUccauGGCG--GCGACGACCCUGaCCGg -3' miRNA: 3'- -UGCGG----UCGUuaUGUUGCUGGGGC-GGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 89696 | 0.74 | 0.413725 |
Target: 5'- uGCGCguGCGuauaGACGAUCCCGCCu -3' miRNA: 3'- -UGCGguCGUuaugUUGCUGGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 15950 | 0.74 | 0.413725 |
Target: 5'- gGCGCCAGCAcuUugAcCGAUCCUGCCc -3' miRNA: 3'- -UGCGGUCGUu-AugUuGCUGGGGCGGc -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 7360 | 0.74 | 0.413725 |
Target: 5'- -aGCCuGCGGUGCA--GugCCCGCCGg -3' miRNA: 3'- ugCGGuCGUUAUGUugCugGGGCGGC- -5' |
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6727 | 5' | -56.3 | NC_001875.2 | + | 85825 | 0.74 | 0.42255 |
Target: 5'- gGCGCCAGCugcguggGCGGcCGAUCCUGCUGu -3' miRNA: 3'- -UGCGGUCGuua----UGUU-GCUGGGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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