miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 417 1.08 0.002832
Target:  5'- gACGCCAGCAAUACAACGACCCCGCCGc -3'
miRNA:   3'- -UGCGGUCGUUAUGUUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 1197 0.69 0.729779
Target:  5'- uGCGCCcaacGCuGUGCGccuCgGGCCCCGCCa -3'
miRNA:   3'- -UGCGGu---CGuUAUGUu--G-CUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 1935 0.67 0.834826
Target:  5'- gGCGgCGGCG--GCGGCGGCaugcucguggucacaUCCGCCGa -3'
miRNA:   3'- -UGCgGUCGUuaUGUUGCUG---------------GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 3979 0.71 0.617698
Target:  5'- cGCGCCGGCGugcgccgACGACGGCCgguggucgaCGCUGa -3'
miRNA:   3'- -UGCGGUCGUua-----UGUUGCUGGg--------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 5278 0.71 0.586892
Target:  5'- cUGCCAcGCGAUGgcCGACGugCCCGCg- -3'
miRNA:   3'- uGCGGU-CGUUAU--GUUGCugGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 5514 0.69 0.739639
Target:  5'- cACGuCCAGCGGgugguCAAUGACCagcaCCGCCc -3'
miRNA:   3'- -UGC-GGUCGUUau---GUUGCUGG----GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 5847 0.73 0.486351
Target:  5'- cGCGCCcgcguAGCAGUGCAccagcacGCGuuuGCCCuCGCCGa -3'
miRNA:   3'- -UGCGG-----UCGUUAUGU-------UGC---UGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 5935 0.69 0.709813
Target:  5'- aGCGCCGcGCAGguggGC-GCGGCCUCGCa- -3'
miRNA:   3'- -UGCGGU-CGUUa---UGuUGCUGGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 6702 0.68 0.76861
Target:  5'- cACGCCAuuuGUACAccAUG-CCCCGCCa -3'
miRNA:   3'- -UGCGGUcguUAUGU--UGCuGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 6746 0.68 0.76861
Target:  5'- uGCGCguGU-AUAUAACGGCCCacCGUCGa -3'
miRNA:   3'- -UGCGguCGuUAUGUUGCUGGG--GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 7360 0.74 0.413725
Target:  5'- -aGCCuGCGGUGCA--GugCCCGCCGg -3'
miRNA:   3'- ugCGGuCGUUAUGUugCugGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 7447 0.71 0.597137
Target:  5'- cGCGCCGGCGAuUGCGGCGGuguaCgGCCGa -3'
miRNA:   3'- -UGCGGUCGUU-AUGUUGCUgg--GgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 7561 0.66 0.847912
Target:  5'- gACGCCGGCGG-ACgAGCGGCaCCC-CUGu -3'
miRNA:   3'- -UGCGGUCGUUaUG-UUGCUG-GGGcGGC- -5'
6727 5' -56.3 NC_001875.2 + 7610 0.72 0.526351
Target:  5'- -gGCCGGCAGUGCAAggacacguacacCGACCUgcgcacacaCGCCGa -3'
miRNA:   3'- ugCGGUCGUUAUGUU------------GCUGGG---------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 8254 0.7 0.669151
Target:  5'- -aGCCGGCGA-AUcuUGugCCCGCCGu -3'
miRNA:   3'- ugCGGUCGUUaUGuuGCugGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 8994 0.68 0.783624
Target:  5'- uGCGCCAGCugaaugaguugguGUugGGCG-CgCCGCCu -3'
miRNA:   3'- -UGCGGUCGu------------UAugUUGCuGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 9312 0.71 0.607408
Target:  5'- cGCGCCGgacGCAAU-CGGCGaagcuGCCCgGCCGg -3'
miRNA:   3'- -UGCGGU---CGUUAuGUUGC-----UGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 9902 0.74 0.449689
Target:  5'- gACGCCAucGC-GUACAACGACagUCGCCGg -3'
miRNA:   3'- -UGCGGU--CGuUAUGUUGCUGg-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 10081 0.66 0.871057
Target:  5'- cCGCUAG-AAUACuuGCGGCCCgcgCGCCa -3'
miRNA:   3'- uGCGGUCgUUAUGu-UGCUGGG---GCGGc -5'
6727 5' -56.3 NC_001875.2 + 10362 0.68 0.796473
Target:  5'- uGCGCCGG----GCuACGGCCUgGCCGa -3'
miRNA:   3'- -UGCGGUCguuaUGuUGCUGGGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.