miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 10394 0.66 0.878346
Target:  5'- aACGCCGccGCGccGUGgcGCGGCaCCCGCUGc -3'
miRNA:   3'- -UGCGGU--CGU--UAUguUGCUG-GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 10577 0.72 0.536299
Target:  5'- uGCGCCaaauguugGGUAGUGCAGCGgguGCCgCGCCa -3'
miRNA:   3'- -UGCGG--------UCGUUAUGUUGC---UGGgGCGGc -5'
6727 5' -56.3 NC_001875.2 + 12120 0.71 0.597137
Target:  5'- uCGCCAGUGcuucUGCAACG-CgCCGCCGg -3'
miRNA:   3'- uGCGGUCGUu---AUGUUGCuGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 12326 0.67 0.822983
Target:  5'- gGCGgCGGCGc-ACAGCGGCUUCaGCCGa -3'
miRNA:   3'- -UGCgGUCGUuaUGUUGCUGGGG-CGGC- -5'
6727 5' -56.3 NC_001875.2 + 12334 0.68 0.785477
Target:  5'- -gGCCAGCGAgaggucguguuUGACGGCUUCGCCa -3'
miRNA:   3'- ugCGGUCGUUau---------GUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 12422 0.68 0.759064
Target:  5'- cGCGCCaAGCAGgcCGuuGCGugCgCGCCGc -3'
miRNA:   3'- -UGCGG-UCGUUauGU--UGCugGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 12558 0.68 0.749403
Target:  5'- gGCGCgCGGCAA-ACAGCGGCCCgaCGaCGa -3'
miRNA:   3'- -UGCG-GUCGUUaUGUUGCUGGG--GCgGC- -5'
6727 5' -56.3 NC_001875.2 + 14815 0.69 0.709813
Target:  5'- aGCGCCAGCAugguCAGCGcGCCCUGg-- -3'
miRNA:   3'- -UGCGGUCGUuau-GUUGC-UGGGGCggc -5'
6727 5' -56.3 NC_001875.2 + 15026 0.67 0.805471
Target:  5'- gGCGuCCAGCAcgGgAACGugUCCGUUu -3'
miRNA:   3'- -UGC-GGUCGUuaUgUUGCugGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 15517 0.66 0.878346
Target:  5'- cACGcCCAGCAAgauUACAACauGACCuuGaCUGa -3'
miRNA:   3'- -UGC-GGUCGUU---AUGUUG--CUGGggC-GGC- -5'
6727 5' -56.3 NC_001875.2 + 15917 0.69 0.689579
Target:  5'- uUGCCGGCAccgGCAACauGACCCaGCUGg -3'
miRNA:   3'- uGCGGUCGUua-UGUUG--CUGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 15950 0.74 0.413725
Target:  5'- gGCGCCAGCAcuUugAcCGAUCCUGCCc -3'
miRNA:   3'- -UGCGGUCGUu-AugUuGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 16113 0.66 0.885412
Target:  5'- -gGCCgGGCAggAUGCGgucaaagugcugGCG-CCCCGCCa -3'
miRNA:   3'- ugCGG-UCGU--UAUGU------------UGCuGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 16261 0.7 0.679385
Target:  5'- cGCGCguGCGucACGugGugCCCGgCGa -3'
miRNA:   3'- -UGCGguCGUuaUGUugCugGGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 16537 0.7 0.669151
Target:  5'- cGCGCguGCAAUACAAUGACgUgCGCgGc -3'
miRNA:   3'- -UGCGguCGUUAUGUUGCUG-GgGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 17250 0.67 0.805471
Target:  5'- cCGCCAGUGGcGC-GCGGCuugCCCGCCu -3'
miRNA:   3'- uGCGGUCGUUaUGuUGCUG---GGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 18140 0.67 0.834826
Target:  5'- aACGCCAcugugaguuacugguGCGGcGCGcGCGACgCCGCCa -3'
miRNA:   3'- -UGCGGU---------------CGUUaUGU-UGCUGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 18481 0.72 0.533308
Target:  5'- uGCGCC-GCGccGCAGCGACgcagccgcgcccgaCCCGCCGc -3'
miRNA:   3'- -UGCGGuCGUuaUGUUGCUG--------------GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 19256 0.74 0.440535
Target:  5'- cGCGCaCAGCA--AC-ACGGCCCUGUCGg -3'
miRNA:   3'- -UGCG-GUCGUuaUGuUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 22816 0.67 0.822983
Target:  5'- -gGCCGuGCGGUcCGACGGCaCCGUCGg -3'
miRNA:   3'- ugCGGU-CGUUAuGUUGCUGgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.