miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 23861 0.66 0.871057
Target:  5'- uCGCCAGCGgacGUGCAGCcguuGCUggugUCGCCGa -3'
miRNA:   3'- uGCGGUCGU---UAUGUUGc---UGG----GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 124272 0.66 0.871057
Target:  5'- cGCGUUGGUcGU-CGACGACCC-GCCGc -3'
miRNA:   3'- -UGCGGUCGuUAuGUUGCUGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 40831 0.66 0.871057
Target:  5'- -gGCCGGCcguggGCAagACGGCgCUCGCCa -3'
miRNA:   3'- ugCGGUCGuua--UGU--UGCUG-GGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 102973 0.66 0.863551
Target:  5'- uCGCCccaAGCGuacucuaGCGGCGACaagugCCCGCCGu -3'
miRNA:   3'- uGCGG---UCGUua-----UGUUGCUG-----GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 87981 0.66 0.847912
Target:  5'- aACGCCcGC-GUAC-GCGACgCCCGCg- -3'
miRNA:   3'- -UGCGGuCGuUAUGuUGCUG-GGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 35489 0.66 0.851105
Target:  5'- uGCGCCAGCAAcgagccgacguauuuUGCGgccaaguaugacGCGGCCacggugcuggCCGCCc -3'
miRNA:   3'- -UGCGGUCGUU---------------AUGU------------UGCUGG----------GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 75588 0.66 0.863551
Target:  5'- gGCGUCGGCGucgGCGAUGGCgUCGgCGu -3'
miRNA:   3'- -UGCGGUCGUua-UGUUGCUGgGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 26768 0.66 0.855834
Target:  5'- uCGCCguAGCAcucGUugAGCGACgCgCCGUCGa -3'
miRNA:   3'- uGCGG--UCGU---UAugUUGCUG-G-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 75988 0.66 0.871057
Target:  5'- -aGUCGGC-GUGCucaAGCGugUCCGCCa -3'
miRNA:   3'- ugCGGUCGuUAUG---UUGCugGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 66815 0.66 0.862024
Target:  5'- uACGCCGGCAGcgaguugagcacaaACGACGGCUgaaagauguuaaaguCCGCCc -3'
miRNA:   3'- -UGCGGUCGUUa-------------UGUUGCUGG---------------GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 91401 0.66 0.847912
Target:  5'- uGCGCCAGCGgcagcucgcaAUugAugGGCCgcagcUCGCUGu -3'
miRNA:   3'- -UGCGGUCGU----------UAugUugCUGG-----GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 88273 0.66 0.871057
Target:  5'- uCGUCAGaCGAagaaGACGccGCCCCGCCa -3'
miRNA:   3'- uGCGGUC-GUUaug-UUGC--UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 128701 0.66 0.855834
Target:  5'- gACGCC-GCGuccgcGCAGCgGGCUUCGCCGc -3'
miRNA:   3'- -UGCGGuCGUua---UGUUG-CUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 29858 0.66 0.871057
Target:  5'- cACGCC-GCAAUGCAcaACGcCUgCGUCGc -3'
miRNA:   3'- -UGCGGuCGUUAUGU--UGCuGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 69442 0.66 0.871057
Target:  5'- gACGCCGGCGuuUGCGcgcCGGCCaCGCUa -3'
miRNA:   3'- -UGCGGUCGUu-AUGUu--GCUGGgGCGGc -5'
6727 5' -56.3 NC_001875.2 + 7561 0.66 0.847912
Target:  5'- gACGCCGGCGG-ACgAGCGGCaCCC-CUGu -3'
miRNA:   3'- -UGCGGUCGUUaUG-UUGCUG-GGGcGGC- -5'
6727 5' -56.3 NC_001875.2 + 61501 0.66 0.871057
Target:  5'- cGCGCCGGCucgGCGccgcaguccGCGugCUCGCg- -3'
miRNA:   3'- -UGCGGUCGuuaUGU---------UGCugGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 44626 0.66 0.885412
Target:  5'- cGCGCCGguGCAcgACuugGCGcACUgCGCCGa -3'
miRNA:   3'- -UGCGGU--CGUuaUGu--UGC-UGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 97901 0.66 0.871057
Target:  5'- uUGCgGGCGucgGCGcCGACgCCCGCUGc -3'
miRNA:   3'- uGCGgUCGUua-UGUuGCUG-GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 56888 0.66 0.866579
Target:  5'- -aGCCGGCAGgucguaccgccgcaGCAGCGGCUugUCGCCu -3'
miRNA:   3'- ugCGGUCGUUa-------------UGUUGCUGG--GGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.