miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 130735 0.67 0.805471
Target:  5'- uACuuUAGCGGUGCGucaucgGCGACCCUGCUu -3'
miRNA:   3'- -UGcgGUCGUUAUGU------UGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130658 0.7 0.669151
Target:  5'- uGCGUCAGCG-----GCGACCCUGCUu -3'
miRNA:   3'- -UGCGGUCGUuauguUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130562 0.7 0.669151
Target:  5'- uGCGUCAGCG-----GCGACCCUGCUu -3'
miRNA:   3'- -UGCGGUCGUuauguUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130517 0.74 0.440535
Target:  5'- gGCGCgugcuacuuuUAGCGGUgcgucaGCGACGACCCUGCCu -3'
miRNA:   3'- -UGCG----------GUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130451 0.7 0.669151
Target:  5'- gGCGCgugcuauuuuUAGCGGUgcgucaGCGACGACCCUGCUu -3'
miRNA:   3'- -UGCG----------GUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130385 0.7 0.669151
Target:  5'- gGCGCgugcuauuuuUAGCGGUgcgucaGCGACGACCCUGCUu -3'
miRNA:   3'- -UGCG----------GUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130319 0.7 0.669151
Target:  5'- gGCGCgugcuauuuuUAGCGGUgcgucaGCGACGACCCUGCUu -3'
miRNA:   3'- -UGCG----------GUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130248 0.76 0.347389
Target:  5'- gUGCUAGCGGUgccucaGCGGCGACCCUGCUu -3'
miRNA:   3'- uGCGGUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130172 0.71 0.627999
Target:  5'- uGCGUCAGCA-----ACGACCCUGCUu -3'
miRNA:   3'- -UGCGGUCGUuauguUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 130127 0.71 0.586892
Target:  5'- gGCGCgugcuauuuuUAGCAGUGCGucagcgGCGACCCUGCUu -3'
miRNA:   3'- -UGCG----------GUCGUUAUGU------UGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 129330 0.68 0.777096
Target:  5'- gGCGCCGGCGGcgccuggggcaacUGCGGCG-CCUCGgCa -3'
miRNA:   3'- -UGCGGUCGUU-------------AUGUUGCuGGGGCgGc -5'
6727 5' -56.3 NC_001875.2 + 129167 0.67 0.831479
Target:  5'- gGCGCC-GCAGuUGCcccaGGCgCCGCCGg -3'
miRNA:   3'- -UGCGGuCGUU-AUGuug-CUGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 128921 0.66 0.871057
Target:  5'- cGCGCCGGgGucgcccACGGCGugCaCgCGCCGg -3'
miRNA:   3'- -UGCGGUCgUua----UGUUGCugG-G-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 128750 0.73 0.496947
Target:  5'- cGCGCCccGGCGcGUGCAcgccguggGCGACCCCGgCGc -3'
miRNA:   3'- -UGCGG--UCGU-UAUGU--------UGCUGGGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 128701 0.66 0.855834
Target:  5'- gACGCC-GCGuccgcGCAGCgGGCUUCGCCGc -3'
miRNA:   3'- -UGCGGuCGUua---UGUUG-CUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 127433 0.67 0.805471
Target:  5'- cACGUCGGCAA-GCAAUGuuGCCgCGCUGu -3'
miRNA:   3'- -UGCGGUCGUUaUGUUGC--UGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 125168 0.7 0.648602
Target:  5'- uGCGCC-GCGucgACAACGugCCCgacGCCa -3'
miRNA:   3'- -UGCGGuCGUua-UGUUGCugGGG---CGGc -5'
6727 5' -56.3 NC_001875.2 + 124712 0.72 0.536299
Target:  5'- gUGCCGcCAA---AGCGACCCCGCCGc -3'
miRNA:   3'- uGCGGUcGUUaugUUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 124272 0.66 0.871057
Target:  5'- cGCGUUGGUcGU-CGACGACCC-GCCGc -3'
miRNA:   3'- -UGCGGUCGuUAuGUUGCUGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 123280 0.69 0.719834
Target:  5'- uGCGCgAGCAggGCAuUGACauuCCGCCGc -3'
miRNA:   3'- -UGCGgUCGUuaUGUuGCUGg--GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.