Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 41328 | 0.67 | 0.518686 |
Target: 5'- -uACGCUG-GCGCUg-GGGCUgCGCa -3' miRNA: 3'- guUGCGACaCGCGGagCCCGGgGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98965 | 0.67 | 0.518686 |
Target: 5'- aAGCGCa--GCGCggCGGGCgCCgCGCCg -3' miRNA: 3'- gUUGCGacaCGCGgaGCCCG-GG-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 39068 | 0.67 | 0.518686 |
Target: 5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3' miRNA: 3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 85222 | 0.67 | 0.51963 |
Target: 5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3' miRNA: 3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 41451 | 0.67 | 0.528157 |
Target: 5'- aCAACGCguuuaGCGCCaUCGacgaGCCCgGCCu -3' miRNA: 3'- -GUUGCGaca--CGCGG-AGCc---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 49532 | 0.67 | 0.528157 |
Target: 5'- cCAGuCGCUG-GUGCUggacuUgGGGCCCgaCGCCa -3' miRNA: 3'- -GUU-GCGACaCGCGG-----AgCCCGGG--GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62351 | 0.67 | 0.528157 |
Target: 5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3' miRNA: 3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 39321 | 0.67 | 0.528157 |
Target: 5'- gCAAcCGCcGgccCGCCUCGcGGCCCCaaaaugGCCa -3' miRNA: 3'- -GUU-GCGaCac-GCGGAGC-CCGGGG------CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 5924 | 0.67 | 0.528157 |
Target: 5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3' miRNA: 3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 45077 | 0.67 | 0.531963 |
Target: 5'- aGGCGCUGaaGCGCCgccuagagugcgaGGGCgagCCGCCa -3' miRNA: 3'- gUUGCGACa-CGCGGag-----------CCCGg--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 55328 | 0.67 | 0.537691 |
Target: 5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3' miRNA: 3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 54331 | 0.66 | 0.5444 |
Target: 5'- gCGACGCguuuUGCGCCagCGGGCagcuuuacucuaucCCCGUg -3' miRNA: 3'- -GUUGCGac--ACGCGGa-GCCCG--------------GGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 40606 | 0.66 | 0.55693 |
Target: 5'- aCGGCGCcgUGguggGCGCCaccaCGcGCCUCGCCu -3' miRNA: 3'- -GUUGCG--ACa---CGCGGa---GCcCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 120682 | 0.66 | 0.566625 |
Target: 5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3' miRNA: 3'- guuGCGACACGCGG-AGCccgGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 90401 | 0.66 | 0.566625 |
Target: 5'- cCGGCGcCUGUGCGCgCgcaGcGGCCCCuGUUu -3' miRNA: 3'- -GUUGC-GACACGCG-Gag-C-CCGGGG-CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 31919 | 0.66 | 0.566625 |
Target: 5'- -cGCGCUGcaccGCGCg-CGGGC-CCGCUc -3' miRNA: 3'- guUGCGACa---CGCGgaGCCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 67702 | 0.66 | 0.566625 |
Target: 5'- gCGACGC-GUGCuGCaaggCGGaGCUCCGCa -3' miRNA: 3'- -GUUGCGaCACG-CGga--GCC-CGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 22918 | 0.66 | 0.567597 |
Target: 5'- cCAGcCGCUGUGUGCCggugaugugcuggagCGGuGCgUgGCCg -3' miRNA: 3'- -GUU-GCGACACGCGGa--------------GCC-CGgGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 101278 | 0.66 | 0.567597 |
Target: 5'- aGGCGCgugcuauuuuuagcgGUGCGUCagCGGcGaCCCCGCUu -3' miRNA: 3'- gUUGCGa--------------CACGCGGa-GCC-C-GGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 122107 | 0.66 | 0.576362 |
Target: 5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3' miRNA: 3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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