miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 5' -56.8 NC_001875.2 + 75518 0.66 0.844984
Target:  5'- -cGAUGGcGUCgGCguuGGUGAUGGCGUUGg -3'
miRNA:   3'- ucUUGCC-CGGgCG---UCGUUACCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 105838 0.66 0.844984
Target:  5'- uGGACGGGCgCGguGUgugGGUGGCc--- -3'
miRNA:   3'- uCUUGCCCGgGCguCG---UUACCGcaac -5'
6729 5' -56.8 NC_001875.2 + 44153 0.66 0.844984
Target:  5'- gGGcACGGcGCCCGUcgGGCuguccGUGGCGg-- -3'
miRNA:   3'- -UCuUGCC-CGGGCG--UCGu----UACCGCaac -5'
6729 5' -56.8 NC_001875.2 + 75356 0.66 0.844984
Target:  5'- -cGAUGGcGUCgGCguuGGUGAUGGCGUUGg -3'
miRNA:   3'- ucUUGCC-CGGgCG---UCGUUACCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 1871 0.66 0.836746
Target:  5'- cGAcCGGugucgcGCCCGCAGCAuuuGUGGCc--- -3'
miRNA:   3'- uCUuGCC------CGGGCGUCGU---UACCGcaac -5'
6729 5' -56.8 NC_001875.2 + 11861 0.66 0.836746
Target:  5'- cGAGCGGGUCCgaacaguuuguGCGGCAGcGcGUGUUa -3'
miRNA:   3'- uCUUGCCCGGG-----------CGUCGUUaC-CGCAAc -5'
6729 5' -56.8 NC_001875.2 + 62748 0.66 0.828317
Target:  5'- cGAACGGcGCgcugggCCGCGGCucgagccGUGGCGgcGg -3'
miRNA:   3'- uCUUGCC-CG------GGCGUCGu------UACCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 75640 0.66 0.819705
Target:  5'- ---uUGGcGUCgGCgucGGCGAUGGCGUUGg -3'
miRNA:   3'- ucuuGCC-CGGgCG---UCGUUACCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 75266 0.66 0.819705
Target:  5'- cGAugGcGGCggCGuCGGCGAUGGCGUc- -3'
miRNA:   3'- uCUugC-CCGg-GC-GUCGUUACCGCAac -5'
6729 5' -56.8 NC_001875.2 + 45872 0.66 0.819705
Target:  5'- uGGACGuGGCCauCGGCAGUGcGCGg-- -3'
miRNA:   3'- uCUUGC-CCGGgcGUCGUUAC-CGCaac -5'
6729 5' -56.8 NC_001875.2 + 246 0.66 0.810918
Target:  5'- ---uUGGGCCgGCGGCGGaucgGGCGg-- -3'
miRNA:   3'- ucuuGCCCGGgCGUCGUUa---CCGCaac -5'
6729 5' -56.8 NC_001875.2 + 37880 0.67 0.792854
Target:  5'- -cGGCGGGCCgCGcCAGCGGcuugcUGGCGc-- -3'
miRNA:   3'- ucUUGCCCGG-GC-GUCGUU-----ACCGCaac -5'
6729 5' -56.8 NC_001875.2 + 39661 0.67 0.764667
Target:  5'- gAGuuUGGGCCgGCGGCGcgcGGCGgcGa -3'
miRNA:   3'- -UCuuGCCCGGgCGUCGUua-CCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 72553 0.67 0.755018
Target:  5'- -cAACGGGCgCUGCgGGCGcgGGCGcgGg -3'
miRNA:   3'- ucUUGCCCG-GGCG-UCGUuaCCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 50527 0.67 0.755018
Target:  5'- --cGCuGGUCCGCGGuCAGUGGCGc-- -3'
miRNA:   3'- ucuUGcCCGGGCGUC-GUUACCGCaac -5'
6729 5' -56.8 NC_001875.2 + 128332 0.67 0.755018
Target:  5'- --uAUGGGCCCGCGuGCAAaaGCGUg- -3'
miRNA:   3'- ucuUGCCCGGGCGU-CGUUacCGCAac -5'
6729 5' -56.8 NC_001875.2 + 1702 0.67 0.755018
Target:  5'- cGGuuGCGuGGUuuGCGGCAAaauagcgGGCGUUGu -3'
miRNA:   3'- -UCu-UGC-CCGggCGUCGUUa------CCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 113615 0.68 0.725441
Target:  5'- -cGGCGGGCCgCgGCGGCAAgagcGGCGa-- -3'
miRNA:   3'- ucUUGCCCGG-G-CGUCGUUa---CCGCaac -5'
6729 5' -56.8 NC_001875.2 + 21704 0.68 0.725441
Target:  5'- --cGCGcGGCCCGCGGUAAgcguGCGUUu -3'
miRNA:   3'- ucuUGC-CCGGGCGUCGUUac--CGCAAc -5'
6729 5' -56.8 NC_001875.2 + 84315 0.68 0.714396
Target:  5'- uAGuAGCGGcGCCUGCGGUAcccggagcggcgaGUGGCGg-- -3'
miRNA:   3'- -UC-UUGCC-CGGGCGUCGU-------------UACCGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.