Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 5' | -51 | NC_001875.2 | + | 5316 | 1.06 | 0.009448 |
Target: 5'- gCUGACGAGCACGUUGCGGCUCAAAAAc -3' miRNA: 3'- -GACUGCUCGUGCAACGCCGAGUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 95553 | 0.79 | 0.446407 |
Target: 5'- -cGACGccGGCGCGcUGCGGCUCGAAu- -3' miRNA: 3'- gaCUGC--UCGUGCaACGCCGAGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 121985 | 0.74 | 0.688326 |
Target: 5'- gCUGGCGGGCACGUUGCccGCcagCGAAAu -3' miRNA: 3'- -GACUGCUCGUGCAACGc-CGa--GUUUUu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 59711 | 0.73 | 0.771508 |
Target: 5'- gCUGGCGAGCGagcaGCGGCUCGc--- -3' miRNA: 3'- -GACUGCUCGUgcaaCGCCGAGUuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 129186 | 0.72 | 0.781391 |
Target: 5'- uCUGGCGAGCGCGagcGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa-CGCCGaguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 66217 | 0.71 | 0.854179 |
Target: 5'- -gGGCGAGCACGcgcGCGGCgUCGGc-- -3' miRNA: 3'- gaCUGCUCGUGCaa-CGCCG-AGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 37761 | 0.71 | 0.854179 |
Target: 5'- -cGGCGAGCACGccgccgUGCGGC-CGGc-- -3' miRNA: 3'- gaCUGCUCGUGCa-----ACGCCGaGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 10453 | 0.71 | 0.854179 |
Target: 5'- uUGACGcGGCGCGgcgGCGcGCUCAGu-- -3' miRNA: 3'- gACUGC-UCGUGCaa-CGC-CGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 42018 | 0.71 | 0.862351 |
Target: 5'- -gGACGAGCAguUGUUGCaGCUCGc--- -3' miRNA: 3'- gaCUGCUCGU--GCAACGcCGAGUuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 52174 | 0.7 | 0.877227 |
Target: 5'- uUGACGcGCACGUccgacacUGCGuGCUCAGc-- -3' miRNA: 3'- gACUGCuCGUGCA-------ACGC-CGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 97889 | 0.7 | 0.877986 |
Target: 5'- -cGcACGGGCACGUUGCgGGCgUCGGc-- -3' miRNA: 3'- gaC-UGCUCGUGCAACG-CCG-AGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 55510 | 0.7 | 0.883967 |
Target: 5'- gUGGCGcAGCACcugcucgaugGCGGCUCGGAAu -3' miRNA: 3'- gACUGC-UCGUGcaa-------CGCCGAGUUUUu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 88411 | 0.7 | 0.892636 |
Target: 5'- uCUGACGAGUACGgcggcaGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa----CGCCGaguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 33315 | 0.7 | 0.892636 |
Target: 5'- uUGGCGAGCGCGUgGCGuuGC-CAAGGGu -3' miRNA: 3'- gACUGCUCGUGCAaCGC--CGaGUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 62744 | 0.7 | 0.899577 |
Target: 5'- -cGGCGcGCugGgccGCGGCUCGAGc- -3' miRNA: 3'- gaCUGCuCGugCaa-CGCCGAGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 40857 | 0.7 | 0.906258 |
Target: 5'- aUGACGcGCGCGcgGCGGUUCcAAAu -3' miRNA: 3'- gACUGCuCGUGCaaCGCCGAGuUUUu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 26094 | 0.69 | 0.912674 |
Target: 5'- aUGGCGGGCGCG--GCGGCcaccaCGAAAAa -3' miRNA: 3'- gACUGCUCGUGCaaCGCCGa----GUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 125331 | 0.69 | 0.918824 |
Target: 5'- aUGuuGGGCgGCGUUGUGGCUUAAu-- -3' miRNA: 3'- gACugCUCG-UGCAACGCCGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 105837 | 0.69 | 0.918824 |
Target: 5'- -gGACGGGCGCGguguguggGUGGCcggCAAGGAg -3' miRNA: 3'- gaCUGCUCGUGCaa------CGCCGa--GUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 60242 | 0.69 | 0.924706 |
Target: 5'- aUGGCGAGCACGa-GCGcGCUaGAGGAa -3' miRNA: 3'- gACUGCUCGUGCaaCGC-CGAgUUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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