miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 5' -51 NC_001875.2 + 121985 0.74 0.688326
Target:  5'- gCUGGCGGGCACGUUGCccGCcagCGAAAu -3'
miRNA:   3'- -GACUGCUCGUGCAACGc-CGa--GUUUUu -5'
6731 5' -51 NC_001875.2 + 21262 0.66 0.986039
Target:  5'- -aGGCGcgcGCGCGgcGCGGCUaCGAGc- -3'
miRNA:   3'- gaCUGCu--CGUGCaaCGCCGA-GUUUuu -5'
6731 5' -51 NC_001875.2 + 85242 0.66 0.984193
Target:  5'- -cGACGAGCGCGgguucCGcGCUCGGc-- -3'
miRNA:   3'- gaCUGCUCGUGCaac--GC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 64876 0.66 0.979951
Target:  5'- uUGAUGAGCACGUUaaGGUcgUCGAc-- -3'
miRNA:   3'- gACUGCUCGUGCAAcgCCG--AGUUuuu -5'
6731 5' -51 NC_001875.2 + 38304 0.66 0.97901
Target:  5'- gUGGCGAGCGCcgacaaggccgGCGGCaugCAAGAc -3'
miRNA:   3'- gACUGCUCGUGcaa--------CGCCGa--GUUUUu -5'
6731 5' -51 NC_001875.2 + 47624 0.66 0.977537
Target:  5'- -gGACGAGCGCGc-GCGGCc------ -3'
miRNA:   3'- gaCUGCUCGUGCaaCGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 50332 0.67 0.972077
Target:  5'- -aGACGAGCugGUggUGuCGGCgUCGu--- -3'
miRNA:   3'- gaCUGCUCGugCA--AC-GCCG-AGUuuuu -5'
6731 5' -51 NC_001875.2 + 90912 0.67 0.962187
Target:  5'- uUGACGGGCACGcagccUGCGGUg------ -3'
miRNA:   3'- gACUGCUCGUGCa----ACGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 108239 0.68 0.945548
Target:  5'- -gGACGAGCGCGUcaacgggcUGCuGGC-CAAGc- -3'
miRNA:   3'- gaCUGCUCGUGCA--------ACG-CCGaGUUUuu -5'
6731 5' -51 NC_001875.2 + 28274 0.69 0.930319
Target:  5'- -aGACGAGCACGUgcauuauuuacaUGCGGUg------ -3'
miRNA:   3'- gaCUGCUCGUGCA------------ACGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 59711 0.73 0.771508
Target:  5'- gCUGGCGAGCGagcaGCGGCUCGc--- -3'
miRNA:   3'- -GACUGCUCGUgcaaCGCCGAGUuuuu -5'
6731 5' -51 NC_001875.2 + 10453 0.71 0.854179
Target:  5'- uUGACGcGGCGCGgcgGCGcGCUCAGu-- -3'
miRNA:   3'- gACUGC-UCGUGCaa-CGC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 97889 0.7 0.877986
Target:  5'- -cGcACGGGCACGUUGCgGGCgUCGGc-- -3'
miRNA:   3'- gaC-UGCUCGUGCAACG-CCG-AGUUuuu -5'
6731 5' -51 NC_001875.2 + 55510 0.7 0.883967
Target:  5'- gUGGCGcAGCACcugcucgaugGCGGCUCGGAAu -3'
miRNA:   3'- gACUGC-UCGUGcaa-------CGCCGAGUUUUu -5'
6731 5' -51 NC_001875.2 + 33315 0.7 0.892636
Target:  5'- uUGGCGAGCGCGUgGCGuuGC-CAAGGGu -3'
miRNA:   3'- gACUGCUCGUGCAaCGC--CGaGUUUUU- -5'
6731 5' -51 NC_001875.2 + 125331 0.69 0.918824
Target:  5'- aUGuuGGGCgGCGUUGUGGCUUAAu-- -3'
miRNA:   3'- gACugCUCG-UGCAACGCCGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 60242 0.69 0.924706
Target:  5'- aUGGCGAGCACGa-GCGcGCUaGAGGAa -3'
miRNA:   3'- gACUGCUCGUGCaaCGC-CGAgUUUUU- -5'
6731 5' -51 NC_001875.2 + 120918 0.66 0.984193
Target:  5'- -cGACGAGCACuucGCGGUUgGAc-- -3'
miRNA:   3'- gaCUGCUCGUGcaaCGCCGAgUUuuu -5'
6731 5' -51 NC_001875.2 + 95553 0.79 0.446407
Target:  5'- -cGACGccGGCGCGcUGCGGCUCGAAu- -3'
miRNA:   3'- gaCUGC--UCGUGCaACGCCGAGUUUuu -5'
6731 5' -51 NC_001875.2 + 129186 0.72 0.781391
Target:  5'- uCUGGCGAGCGCGagcGCGGCg------ -3'
miRNA:   3'- -GACUGCUCGUGCaa-CGCCGaguuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.