Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 5' | -51 | NC_001875.2 | + | 66217 | 0.71 | 0.854179 |
Target: 5'- -gGGCGAGCACGcgcGCGGCgUCGGc-- -3' miRNA: 3'- gaCUGCUCGUGCaa-CGCCG-AGUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 29007 | 0.68 | 0.954379 |
Target: 5'- cCUG-CGGGCACGUgGUGGCgugcggCAAGu- -3' miRNA: 3'- -GACuGCUCGUGCAaCGCCGa-----GUUUuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 9775 | 0.67 | 0.96572 |
Target: 5'- gUGACGuGCACGUgaaGCcGCUgGAGGAg -3' miRNA: 3'- gACUGCuCGUGCAa--CGcCGAgUUUUU- -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 120918 | 0.66 | 0.984193 |
Target: 5'- -cGACGAGCACuucGCGGUUgGAc-- -3' miRNA: 3'- gaCUGCUCGUGcaaCGCCGAgUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 62744 | 0.7 | 0.899577 |
Target: 5'- -cGGCGcGCugGgccGCGGCUCGAGc- -3' miRNA: 3'- gaCUGCuCGugCaa-CGCCGAGUUUuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 40857 | 0.7 | 0.906258 |
Target: 5'- aUGACGcGCGCGcgGCGGUUCcAAAu -3' miRNA: 3'- gACUGCuCGUGCaaCGCCGAGuUUUu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 5316 | 1.06 | 0.009448 |
Target: 5'- gCUGACGAGCACGUUGCGGCUCAAAAAc -3' miRNA: 3'- -GACUGCUCGUGCAACGCCGAGUUUUU- -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 95553 | 0.79 | 0.446407 |
Target: 5'- -cGACGccGGCGCGcUGCGGCUCGAAu- -3' miRNA: 3'- gaCUGC--UCGUGCaACGCCGAGUUUuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 129186 | 0.72 | 0.781391 |
Target: 5'- uCUGGCGAGCGCGagcGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa-CGCCGaguuuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 110306 | 0.68 | 0.940738 |
Target: 5'- -cGACGAGCGCGacGCGGUgcugCGGu-- -3' miRNA: 3'- gaCUGCUCGUGCaaCGCCGa---GUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 63635 | 0.69 | 0.930319 |
Target: 5'- -gGACGAGC-CGUuuaaauUGUGGCUgGAAAc -3' miRNA: 3'- gaCUGCUCGuGCA------ACGCCGAgUUUUu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 102432 | 0.69 | 0.930319 |
Target: 5'- -cGugGugaAGUACGacGCGGCUCAAAGGu -3' miRNA: 3'- gaCugC---UCGUGCaaCGCCGAGUUUUU- -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 42018 | 0.71 | 0.862351 |
Target: 5'- -gGACGAGCAguUGUUGCaGCUCGc--- -3' miRNA: 3'- gaCUGCUCGU--GCAACGcCGAGUuuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 58398 | 0.69 | 0.930319 |
Target: 5'- gCUGcACGAGCGCcaacuGUUGCGGCggCGGc-- -3' miRNA: 3'- -GAC-UGCUCGUG-----CAACGCCGa-GUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 52174 | 0.7 | 0.877227 |
Target: 5'- uUGACGcGCACGUccgacacUGCGuGCUCAGc-- -3' miRNA: 3'- gACUGCuCGUGCA-------ACGC-CGAGUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 105837 | 0.69 | 0.918824 |
Target: 5'- -gGACGGGCGCGguguguggGUGGCcggCAAGGAg -3' miRNA: 3'- gaCUGCUCGUGCaa------CGCCGa--GUUUUU- -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 128772 | 0.69 | 0.935662 |
Target: 5'- aUGGCGugGGCGCGUUGgcguuguuggacCGGCUCAu--- -3' miRNA: 3'- gACUGC--UCGUGCAAC------------GCCGAGUuuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 79964 | 0.68 | 0.958409 |
Target: 5'- aUGcCGGGCACGUUcaaGCGGCcCGAc-- -3' miRNA: 3'- gACuGCUCGUGCAA---CGCCGaGUUuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 88411 | 0.7 | 0.892636 |
Target: 5'- uCUGACGAGUACGgcggcaGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa----CGCCGaguuuuu -5' |
|||||||
6731 | 5' | -51 | NC_001875.2 | + | 26094 | 0.69 | 0.912674 |
Target: 5'- aUGGCGGGCGCG--GCGGCcaccaCGAAAAa -3' miRNA: 3'- gACUGCUCGUGCaaCGCCGa----GUUUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home